PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03175.1_g00006.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 454aa MW: 50370.5 Da PI: 5.7402

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03175.1_g00006.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00013	124	146	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg +F++ ++ +H ++ Rsa1.0_03175.1_g00006.1 124 FECPICGNPFKTEEEVSVHVESC 146 89*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF143503	1.23E-17	176	241	IPR018997	PUB domain
Pfam	PF09409	2.0E-16	179	244	IPR018997	PUB domain
CDD	cd09212	3.35E-20	179	263	No hit	No description
SMART	SM00580	7.9E-22	180	247	IPR018997	PUB domain
SuperFamily	SSF54236	5.17E-12	320	429	IPR029071	Ubiquitin-related domain
PROSITE profile	PS50033	10.227	345	429	IPR001012	UBX domain
Gene3D	G3DSA:3.10.20.90	1.9E-7	345	428	No hit	No description
Pfam	PF00789	2.6E-4	346	396	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MDDVKDKLKG FMKKVNLSSS SGKFKGSGRV LGSSSSSSSA PVNPIQNRFN PPQSSNPNPT 60 PRPTRPSPSP SAAPLPEKPV SSGSPKKPDP DPVRAPPPQD GFDPYGAFIT SSNRSQNGYS 120 LNMFECPICG NPFKTEEEVS VHVESCLGDT TTTNEDEPAS EKSEMEKLVV VYLSGKPTES 180 SVDVLLRLFK NIVKEPENGK FRRIRMSNAK IKEAIGDVAG GVELLEFVGF ELKEENDEIW 240 AVMDVPGGDR TQLISEVVGM LEKRKIEMNE VQVEPVAPKK IDREIRVFFS VAENVASRIE 300 VPDSFYSLSA DEIKREADLR RKKIAESQLL IPRSYKEKQA KAARKRYKRS MIRVQFPDGV 360 VLQGVFAPWE PTIALYEFVS SALKEPSLQF ELLDPVLVKR RVIPHTPAPG QKPRTLEDEE 420 LVPSALIKFR PIETDSLVYT GLCNELLEIS EPLT

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MDDVKDKLKG FMKKVNLSSS SGKFKGSGRV LGSSSSSSSA PVNPIQNRFN PPQSSNPNPT  60
PRPTRPSPSP SAAPLPEKPV SSGSPKKPDP DPVRAPPPQD GFDPYGAFIT SSNRSQNGYS  120
LNMFECPICG NPFKTEEEVS VHVESCLGDT TTTNEDEPAS EKSEMEKLVV VYLSGKPTES  180
SVDVLLRLFK NIVKEPENGK FRRIRMSNAK IKEAIGDVAG GVELLEFVGF ELKEENDEIW  240
AVMDVPGGDR TQLISEVVGM LEKRKIEMNE VQVEPVAPKK IDREIRVFFS VAENVASRIE  300
VPDSFYSLSA DEIKREADLR RKKIAESQLL IPRSYKEKQA KAARKRYKRS MIRVQFPDGV  360
VLQGVFAPWE PTIALYEFVS SALKEPSLQF ELLDPVLVKR RVIPHTPAPG QKPRTLEDEE  420
LVPSALIKFR PIETDSLVYT GLCNELLEIS EPLT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifw_A	2e-12	300	429	23	146	Tether containing UBX domain for GLUT4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	342	350	ARKRYKRSM

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03175.1_g00006.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018485150.1	0.0	PREDICTED: plant UBX domain-containing protein 2
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	A0A0D3DA54	0.0	A0A0D3DA54_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EXP1	0.0	A0A3P6EXP1_BRAOL; Uncharacterized protein
STRING	Bo7g078630.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9835	16	18

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]