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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Rsa1.0_03188.1_g00004.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 701aa MW: 76539.6 Da PI: 6.5154 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 89.9 | 2.3e-28 | 233 | 286 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G ekA+Pk+ilelm+v gLt+e+v+SHLQkYR+
Rsa1.0_03188.1_g00004.1 233 KPRVVWSVELHQQFVAAVNQL-GVEKAVPKKILELMNVAGLTRENVASHLQKYRI 286
79*******************.********************************7 PP
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| 2 | Response_reg | 76 | 1.4e-25 | 37 | 145 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84
vl+vdD+p+ +++l+++l+ y ev+ + +e al ll++++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++
Rsa1.0_03188.1_g00004.1 37 VLVVDDDPTCLMILERMLRTCLY-EVTKCNRAEMALSLLRKNKhgFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKS 120
89*********************.***************888889**********************6644.8************* PP
HHHHHHHTTESEEEESS--HHHHHH CS
Response_reg 85 dalealkaGakdflsKpfdpeelvk 109
+l+ + Ga d+l Kp+ +e+l +
Rsa1.0_03188.1_g00004.1 121 VVLKGVTHGAVDYLIKPVRMEALKN 145
********************99986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 8.8E-191 | 16 | 691 | IPR017053 | Response regulator B-type, plant |
| SuperFamily | SSF52172 | 6.55E-36 | 33 | 165 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 1.7E-41 | 34 | 176 | No hit | No description |
| SMART | SM00448 | 7.4E-31 | 35 | 147 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42.221 | 36 | 151 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 8.5E-23 | 37 | 145 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 7.69E-28 | 38 | 150 | No hit | No description |
| PROSITE profile | PS51294 | 11.885 | 230 | 289 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 5.73E-19 | 231 | 290 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 2.2E-29 | 232 | 291 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 4.6E-24 | 233 | 286 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 4.7E-8 | 235 | 285 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
| GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
| GO:0048367 | Biological Process | shoot system development | ||||
| GO:0080022 | Biological Process | primary root development | ||||
| GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 701 aa Download sequence Send to blast |
MMNPSQGRGL GSGGGTSSCR KQGGEAVVEM FPSGLRVLVV DDDPTCLMIL ERMLRTCLYE 60 VTKCNRAEMA LSLLRKNKHG FDIVISDVHM PDMDGFKLLE HVGLEMDLPV IMMSADDSKS 120 VVLKGVTHGA VDYLIKPVRM EALKNIWQHV VRKRRSEWSV PEHSGSVEET GQQQQQQRGP 180 GVSGGEDAVD DNASSVNNEG NNNNWRSSSN NSRKRKEEEG EEQGDDDASN LKKPRVVWSV 240 ELHQQFVAAV NQLGVEKAVP KKILELMNVA GLTRENVASH LQKYRIYLRR LGGVSQHQGN 300 LNNSFMTGQD ASFGPLSSLN GFDLQALAVA GQLPAQSLAQ LQAAGLGRPT AAMVSKSGLP 360 VSSVVDERSI FSFDNSKPRF GDGIIGHHHQ TQQQPQMNLL HGVPTGMEPR QLAGLQQLPV 420 GNNNRMSIQQ QIAAVRAGHS VQNNSGMMMM PQQQPFPRGG PSIIRQPMLP NRITERSGFS 480 GRSSVVPESS SRVLPTSYTN LRTQQQHSST SVAFSNFQQE LPVNSFPLAS APGLAQVRRP 540 HSSSPSSYQE EVNSSEPGFT TPSYDMFSTN RHNDWDLRSI AFDAHQDAES VAFSNSEAFS 600 SSSMSRNNNN TTVAAATDLV RSQQQTPGMV THHQVYGIGG GSSVRVKSER VAADTAAMAF 660 QEQYSNQEDL MSALLKQEGV APVVVDTEFD FDAYSIDDIP V |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 1e-22 | 232 | 291 | 4 | 63 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Rsa1.0_03188.1_g00004.1 |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_018463462.1 | 0.0 | PREDICTED: two-component response regulator ARR1-like | ||||
| Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | M4E086 | 0.0 | M4E086_BRARP; Two-component response regulator | ||||
| STRING | Bra022183.1-P | 0.0 | (Brassica rapa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM2403 | 27 | 73 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.2 | 0.0 | response regulator 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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