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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Rsa1.0_03195.1_g00003.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
Trihelix |
| Protein Properties |
Length: 295aa MW: 32665.4 Da PI: 5.8399 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_03195.1_g00003.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 45.6 | 1.8e-14 | 73 | 156 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83
+W+++ +++Liea + ++ ++g lk+++W +v++ + e +++++ +qCk++++ ++k+yk++k+ + s++++f+
Rsa1.0_03195.1_g00003.1 73 CWSEEATKVLIEAWGHRFSEPGKGTLKQQQWHQVAEIVnesGECKYTKTDVQCKNRIDTVKKKYKQEKAKIGP------SKWVFFK 152
7*************************************76667779***********************9996......58***** PP
trihelix 84 qlea 87
+lea
Rsa1.0_03195.1_g00003.1 153 KLEA 156
*985 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 295 aa
Download sequence Send
to blast |
MEDEDETQSP RDSLSPPPIL PTSDDVTVAS ATKPPPSSSS SQQSPLTLTV HTPSVTVTVN 60
KNGRSGGGGR DDCWSEEATK VLIEAWGHRF SEPGKGTLKQ QQWHQVAEIV NESGECKYTK 120
TDVQCKNRID TVKKKYKQEK AKIGPSKWVF FKKLEALIGG GGGKAPARST SSSGGPMRWH 180
FRKRSASDTD SDSDPEPSPE SLPPKRVKMD ESGVGDVARA ILGFTQAYEK AETAKLKLMM 240
ELEKERMEFA KEMELQRMQF LKTQMEITQN NQEEERSKRD GDDDDNVKIN GDVSS
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}. |
