PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03240.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 162aa    MW: 18920.6 Da    PI: 9.7937
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03240.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind43.67.8e-1412991100
                              HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
             HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                              aFl+k ye+++d++++++isw  ng++fvv+++ + ++++Lp      nfa F    + YgF+k+ + ++         eF  k F
  Rsa1.0_03240.1_g00002.1  12 AFLNKAYELVDDPSTDKIISWAPNGRTFVVWKPLKCSSDLLPLRLGIANFARF----ESYGFSKIVSGQQ--------LEFLCKDF 85 
                              69******************************************999999987....89******99986........6******* PP

                              XXXXXXXXXXXXXX CS
             HSF_DNA-bind  87 kkgkkellekikrk 100
                               kg+ elle+i  +
  Rsa1.0_03240.1_g00002.1  86 VKGHPELLERISDR 99 
                              **********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.3E-17693IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.8E-19999IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.71E-161096IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.1E-131397IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDFSTERTRI CAFLNKAYEL VDDPSTDKII SWAPNGRTFV VWKPLKCSSD LLPLRLGIAN  60
FARFESYGFS KIVSGQQLEF LCKDFVKGHP ELLERISDRY VAKLRAFYEK RYKPFEDRLK  120
NAKTKEEWDL AVKEQKGFFE NDSKERRASR PRTKSSPPAP EN
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03240.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450076.11e-117PREDICTED: heat stress transcription factor A-4c-like
TrEMBLA0A078GTE42e-63A0A078GTE4_BRANA; BnaCnng04980D protein
TrEMBLA0A0D3DMG42e-63A0A0D3DMG4_BRAOL; Uncharacterized protein
STRINGBo8g049370.13e-64(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142121123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.19e-18heat shock transcription factor A1D