PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03256.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 148aa    MW: 16870.6 Da    PI: 7.6189
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03256.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.2e-055072123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C + F ++  L  H++ H
  Rsa1.0_03256.1_g00002.1 50 FSCNYCQRKFYSSQALGGHQNAH 72
                             89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.72E-64777No hitNo description
PROSITE profilePS5015711.0945077IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDFQPNTSLR LSPPSYKNHQ LNLELVLEPS STSSSSSTNS SSYLEQPRVF SCNYCQRKFY  60
SSQALGGHQN AHKLERTLAK KSRELFRSST TVDSDQPYPF YGRFEIYGHG YEGFVKSGGP  120
TDFFNRRVPE SGLDQDQEMS HLDLSLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03256.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114821e-135AB011482.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2.
GenBankATHZFPB1e-135L39645.1 Arabidopsis thaliana zinc finger protein 2 (ZFP2) mRNA, complete cds.
GenBankBT0246871e-135BT024687.1 Arabidopsis thaliana At5g57520 mRNA, complete cds.
GenBankCP0026881e-135CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469447.11e-105PREDICTED: zinc finger protein 2-like
SwissprotQ392611e-81ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A087GBP92e-82A0A087GBP9_ARAAL; Uncharacterized protein
TrEMBLR0GS962e-82R0GS96_9BRAS; Uncharacterized protein
STRINGCagra.2848s0032.1.p3e-83(Capsella grandiflora)
STRINGA0A087GBP93e-83(Arabis alpina)
STRINGXP_006281125.14e-83(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66212844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-82zinc finger protein 2