PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03281.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 180aa    MW: 20572.4 Da    PI: 8.3378
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03281.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.8e-091775648
                             HHHHHHHHHHHHHTTTT.................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  6 teEdellvdavkqlGgg.................tWktIartmgkgRtlkqcksrwqkyl 48
                             ++E++l+++ +k+ G++                 +W+ Ia +++ gRt++++ ++ +++l
  Rsa1.0_03281.1_g00002.1 17 PQEQDLIIRMHKLIGNRyflvpplilrlitfpntRWSQIAGRLP-GRTDNEVENYCNTHL 75
                             689*****************************************.***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.0E-51177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-131775IPR009057Homeodomain-like
PfamPF002491.0E-71775IPR001005SANT/Myb domain
CDDcd001671.14E-61775No hitNo description
SuperFamilySSF466893.9E-64186IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEELSETKYQ KRRHVPPQEQ DLIIRMHKLI GNRYFLVPPL ILRLITFPNT RWSQIAGRLP  60
GRTDNEVENY CNTHLIKKSN PKKQNATESV EATPSFIDKP VIYTEVRRSH GEEGTTTTCI  120
EETNCFGNDV PIGSPAPLIS HYPDSQTLLC LTHVLPSPIS FPFFGTLLNS SKRDNFSHRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03281.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282345.29e-46transcription factor MYB82
SwissprotQ9LTF74e-46MYB82_ARATH; Transcription factor MYB82
TrEMBLR0GVN88e-45R0GVN8_9BRAS; Uncharacterized protein
STRINGXP_006282345.11e-45(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.13e-41myb domain protein 82