PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03292.1_g00006.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 362aa MW: 38465.2 Da PI: 8.573

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03292.1_g00006.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	112.5	1.9e-35	67	126	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e++lkcprCdstntkfCy+nnysl+qPr+fCk+CrryWt GGalr vP Ggg+r+nk+++ Rsa1.0_03292.1_g00006.1 67 ETSLKCPRCDSTNTKFCYFNNYSLTQPRHFCKSCRRYWTCGGALRSVPPGGGCRRNKRTK 126 6789*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-33	54	124	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.6E-30	69	124	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.593	70	124	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	72	108	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MTTTVGFTGN NISQQFLPHH PLPPQSQQTP PPLHHNGSGE SGGGPGGLIR PGSMAERARL 60 ANIQLPETSL KCPRCDSTNT KFCYFNNYSL TQPRHFCKSC RRYWTCGGAL RSVPPGGGCR 120 RNKRTKNSGC GGGGGSSSSG NSKSQDSTTS NDQYHDLAVA NNQMGPTSST TSLSSLLSSY 180 NAGLIPGHDH SNNVLGLGSS YLPPLKLMPP LDFTDNSSLQ YGAVSVPSYH IGGGSSGGEA 240 SALLTGFDQW RFPITNPQPP LLGGLDNSSS SGFHQFDHHS QTGMHQQNSG QYRPKNIFHN 300 LVPLASVKME DSNNQLSVSR QIFGNEQHLW NIHGAATSTA APTTSSWSDA SNNFSSSSTS 360 NI

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MTTTVGFTGN NISQQFLPHH PLPPQSQQTP PPLHHNGSGE SGGGPGGLIR PGSMAERARL  60
ANIQLPETSL KCPRCDSTNT KFCYFNNYSL TQPRHFCKSC RRYWTCGGAL RSVPPGGGCR  120
RNKRTKNSGC GGGGGSSSSG NSKSQDSTTS NDQYHDLAVA NNQMGPTSST TSLSSLLSSY  180
NAGLIPGHDH SNNVLGLGSS YLPPLKLMPP LDFTDNSSLQ YGAVSVPSYH IGGGSSGGEA  240
SALLTGFDQW RFPITNPQPP LLGGLDNSSS SGFHQFDHHS QTGMHQQNSG QYRPKNIFHN  300
LVPLASVKME DSNNQLSVSR QIFGNEQHLW NIHGAATSTA APTTSSWSDA SNNFSSSSTS  360
NI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Binds to 5'-TAAAGT-3' motif in REV promoter to triggers its transcription, thus regulating adaxial-abaxial polarity and influencing leaf axial patterning in an auxin transport- and response-dependent manner (e.g. IAA6 and IAA19 genes expression) (PubMed:20807212). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:17583520, ECO:0000269\|PubMed:20807212, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03292.1_g00006.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium. {ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018444399.1	0.0	PREDICTED: dof zinc finger protein DOF5.1-like
Swissprot	Q9LZ56	1e-119	DOF51_ARATH; Dof zinc finger protein DOF5.1
TrEMBL	A0A3P6EEB1	1e-138	A0A3P6EEB1_BRAOL; Uncharacterized protein
STRING	Bo9g183590.1	1e-137	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11519	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-105	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]