PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03302.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 206aa    MW: 23487.7 Da    PI: 9.8299
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03302.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1095.5e-3481341128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWka 85 
                              lp+G+rFhPt++el+ +yL +k+ +++l+  ++i+ +d++ ++P ++p   ++ee++ yfF+k++++ + + +r + +  +gyWka
  Rsa1.0_03302.1_g00003.1   8 LPVGYRFHPTEQELILHYLLPKALASPLPS-SIIPVFDVFFSHPLTFPG--DQEERQRYFFCKKKQEVSgNAHRIKTSSGDGYWKA 90 
                              799*************************99.88***************3..4577899*****999887355666667889***** PP

                      NAM  86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                k++ev++ +g++vg+++tLvfy  ++++ + +kt+W+m ey+l
  Rsa1.0_03302.1_g00003.1  91 IRKEREVIA-RGRTVGIRRTLVFYgtNNSSANCNKTRWCMTEYSL 134
                              *********.999***********7656777889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-405154IPR003441NAC domain
PROSITE profilePS5100537.9438154IPR003441NAC domain
PfamPF023656.3E-229134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MVNGGMKLPV GYRFHPTEQE LILHYLLPKA LASPLPSSII PVFDVFFSHP LTFPGDQEER  60
QRYFFCKKKQ EVSGNAHRIK TSSGDGYWKA IRKEREVIAR GRTVGIRRTL VFYGTNNSSA  120
NCNKTRWCMT EYSLAGFAST KVFGEWAVYK VYKRKESKGR RQRRSKGRDH EEEDLNCIHF  180
TIGTDHETCP PPPSPPTSAD ESGSII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-22615513169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03302.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467010.11e-155PREDICTED: NAC domain-containing protein 41-like
TrEMBLV4LG111e-117V4LG11_EUTSA; Uncharacterized protein
STRINGXP_006399904.11e-118(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.12e-87NAC domain containing protein 84