PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03305.1_g00003.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WOX

Protein Properties

Length: 168aa MW: 19185.8 Da PI: 10.2229

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03305.1_g00003.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.1	9.4e-21	6	65	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Rsa1.0_03305.1_g00003.1 6 TRWNPTQEQIGILEILYKGgMRTPNAQQIEHITSQLgkygKIEGKNVFYWFQNHKARERQ 65 7***************99************************************97 PP
2	Wus_type_Homeobox	116.1	1.7e-37	6	67	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe lyk G+rtPn+++i++it++L +yGkie+kNVfyWFQN+kaRerqkq Rsa1.0_03305.1_g00003.1 6 TRWNPTQEQIGILEILYKGGMRTPNAQQIEHITSQLGKYGKIEGKNVFYWFQNHKARERQKQ 67 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.734	1	66	IPR001356	Homeobox domain
SMART	SM00389	7.1E-7	3	70	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.51E-12	4	70	IPR009057	Homeodomain-like
Pfam	PF00046	2.1E-18	6	65	IPR001356	Homeobox domain
CDD	cd00086	3.90E-5	6	67	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.6E-8	7	65	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MHPGGTRWNP TQEQIGILEI LYKGGMRTPN AQQIEHITSQ LGKYGKIEGK NVFYWFQNHK 60 ARERQKQKRN NLISLGCQGS LSTTSVSNAS VTMKTRTSSS PDLKRESLVM KELVEENEYK 120 RTCRSWGFEN LKIESRRNIN SSINATIATT FNIDNVTLEL FPLHPEGK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03305.1_g00003.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018487222.1	1e-123	PREDICTED: WUSCHEL-related homeobox 4-like
Swissprot	Q6X7J9	5e-92	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A078I3Z8	1e-114	A0A078I3Z8_BRANA; BnaA05g18600D protein
TrEMBL	A0A397ZHJ7	1e-114	A0A397ZHJ7_BRACM; Uncharacterized protein
TrEMBL	M4ETT0	1e-114	M4ETT0_BRARP; Uncharacterized protein
STRING	Bra032212.1-P	1e-115	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5980	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	2e-94	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]