PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03317.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 246aa MW: 26973.6 Da PI: 7.8896

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03317.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.2	9.6e-32	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf....pa.eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlr++C+++C+l+p++ pa +q +++ +v+k+FG++ ++++++++pe++r+++++sl+yeA+ r+ +Pv+Gavg+++ Rsa1.0_03317.1_g00001.1 2 SCNGCRVLRKGCSESCILRPCIqwiePAeAQGHATVFVAKFFGRAGLMSFISSVPESQRPALFQSLLYEACGRTVNPVNGAVGLLW 87 6**********************9762558************************************************** PP DUF260 82 klqqqleqlkaelall 97 +++++++q+++e++l+ Rsa1.0_03317.1_g00001.1 88 TGNWNICQAAVETVLR 103 ********999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.307	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCIQWIEPAE AQGHATVFVA KFFGRAGLMS FISSVPESQR 60 PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNICQAAVET VLRGGSLRPI PELLTRDGGF 120 GGFPSPTSDE ASEICTEMLN DSGDGNIYHH CRFSSSRSRP TVTPPKRKRL GTEQHQQQQR 180 PCSELDLSLL SIFPIKTRQL KEETARPETP SMYSGESVTT TPFTDNIAGE RFARGGETTK 240 LLNLFA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03317.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018436786.1	0.0	PREDICTED: LOB domain-containing protein 38-like
Swissprot	Q9SN23	1e-128	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A3P5YEH0	1e-154	A0A3P5YEH0_BRACM; Uncharacterized protein
STRING	Bra036040.1-P	1e-155	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-123	LOB domain-containing protein 38