PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03318.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HB-other
Protein Properties Length: 148aa    MW: 16548 Da    PI: 8.5049
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03318.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.8e-2093148156
                              TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              +++ +++t++q++ Le++F+++ +p++++r +L+++l+L+ rqVk+WFqNrR+++k
  Rsa1.0_03318.1_g00001.1  93 KKRYHRHTAKQIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQMK 148
                              688999***********************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-2279148IPR009057Homeodomain-like
SuperFamilySSF466895.13E-2080148IPR009057Homeodomain-like
PROSITE profilePS5007117.23290148IPR001356Homeobox domain
SMARTSM003895.3E-1191148IPR001356Homeobox domain
PfamPF000464.2E-1893148IPR001356Homeobox domain
CDDcd000863.75E-1793148No hitNo description
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MNFNGYLGDG SSGDHFSFSA ASTMPHSRPF SSNGLSLGLQ TDGVNGGGEA FETNATRNKS  60
RGGEDGESRS ESDNAEAVSG DDLETGDKPP RKKKRYHRHT AKQIQDLESV FKECAHPDEK  120
QRLDLSRRLN LDPRQVKFWF QNRRTQMK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03318.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1824903e-84DQ182490.1 Brassica napus baby boom interacting protein 2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442581.11e-101PREDICTED: homeobox-leucine zipper protein HDG1
SwissprotQ9M2E88e-68HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA0A3N6SJ266e-94A0A3N6SJ26_BRACR; Uncharacterized protein (Fragment)
TrEMBLA0A3P6GWZ86e-89A0A3P6GWZ8_BRAOL; Uncharacterized protein
STRINGBo6g077480.18e-89(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17003611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.11e-57homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]