PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03359.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 482aa    MW: 53480.5 Da    PI: 5.7521
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03359.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS313.25.8e-961034751373
                     GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaal 81 
                              lv+lL+++A+a    d++  l++ lLa+l+++ s ++ ++m+Rlaa+ft++L++   +   ++ ++   +  +++ ++ ++++ a+
  Rsa1.0_03359.1_g00001.1 103 LVHLLVAAADASVGADKTreLTRVLLAKLKDMTSFNDrTNMERLAAHFTNGLSKLHKE--ANVQRQYgpHQHPDHVDDKVDVMLAF 186
                              689******997654443349***********8877769*************998887..455555511344444456999999** PP

                     GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetge 163
                              ++++++sP+++f++lta qaIleav+ e+r+Hi+D+di+ G+QWp+L+qaL sR+ gp   +lRiT+++++++g  s  +++e g+
  Rsa1.0_03359.1_g00001.1 187 QMLQNMSPYINFGYLTATQAILEAVKYERRIHIVDYDITDGVQWPSLMQALVSRDTGPSaqHLRITALSRATNGkkSVAAVQEAGR 272
                              *******************************************************765446*********999999999******* PP

                     GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh. 248
                              rL+ fAe++g pf+++     + +++++++L++ +gEa+++n++l+l r+ +++ ++     ++L+  k+l+Pk+v++v++e+ + 
  Rsa1.0_03359.1_g00001.1 273 RLTAFAESIGQPFSYHH-CRMDSDTFNPSSLKLVRGEAVVINCMLHLPRFGHQPPNSII---SFLSEAKTLNPKLVTLVHEEVGLm 354
                              ****************9.7889*****************************99888888...9*********************99 PP

                     GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplseka 333
                              +++ Fl rf++ l+ +sa+fdsle++      +r +vEr+++g++++ +++        ++ e++++W  +l + GFkpv++s  +
  Rsa1.0_03359.1_g00001.1 355 GNQGFLYRFMDLLHQFSAIFDSLEEG-----PARGFVERVIFGPWVSGWLTRIAITdDGAEVESVASWPLWLASNGFKPVEVSFAN 435
                              ***********************999.....8*****************998765536789************************* PP

                     GRAS 334 akqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                               +qaklll+ ++ dgy vee  ++ lvlgWk+r+Lvs+S+W
  Rsa1.0_03359.1_g00001.1 436 RCQAKLLLSLFN-DGYGVEELgKNGLVLGWKSRRLVSASFW 475
                              ************.******98688999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.44877456IPR005202Transcription factor GRAS
PfamPF035142.0E-93103475IPR005202Transcription factor GRAS
Gene3DG3DSA:1.25.40.801.9E-4173217No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MTMNHPYDDL PHLLFSNNTA TATSTSSCVE QHDGISLDMD WDCDFHDLIE SMMSDKGATT  60
ESPPLLPCYH GQEGIFNSSS MGSSMADELD HDVEAGESKG LRLVHLLVAA ADASVGADKT  120
RELTRVLLAK LKDMTSFNDR TNMERLAAHF TNGLSKLHKE ANVQRQYGPH QHPDHVDDKV  180
DVMLAFQMLQ NMSPYINFGY LTATQAILEA VKYERRIHIV DYDITDGVQW PSLMQALVSR  240
DTGPSAQHLR ITALSRATNG KKSVAAVQEA GRRLTAFAES IGQPFSYHHC RMDSDTFNPS  300
SLKLVRGEAV VINCMLHLPR FGHQPPNSII SFLSEAKTLN PKLVTLVHEE VGLMGNQGFL  360
YRFMDLLHQF SAIFDSLEEG PARGFVERVI FGPWVSGWLT RIAITDDGAE VESVASWPLW  420
LASNGFKPVE VSFANRCQAK LLLSLFNDGY GVEELGKNGL VLGWKSRRLV SASFWASCES  480
SE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-4011447528377Protein SCARECROW
5b3h_D2e-4011447528377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03359.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2425540.0JX242554.1 Brassica rapa isolate BrNSP2chiifu nodulation signaling pathway 2-like protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455658.10.0PREDICTED: scarecrow-like protein 26
SwissprotQ9SUF50.0SCL26_ARATH; Scarecrow-like protein 26
TrEMBLM4CFB20.0M4CFB2_BRARP; Uncharacterized protein
STRINGBra002894.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.10.0GRAS family protein