PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03399.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 312aa    MW: 34141.7 Da    PI: 9.5857
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03399.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.46.5e-383290462
                   zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                              +lkcprCds+ntkfCyynnyslsqPryfCkaC+ryWt+GG+lrnvPvGg+ rknk+++
  Rsa1.0_03399.1_g00001.1 32 PQLKCPRCDSSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK 90
                             689*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-262988IPR003851Zinc finger, Dof-type
PfamPF027013.8E-333388IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7233488IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103672IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MQSKNMIVAP SHQQQQQQQQ QQQQQQQQPH PPQLKCPRCD SSNTKFCYYN NYSLSQPRYF  60
CKACKRYWTR GGTLRNVPVG GSYRKNKRVK RPATATGTST ASSTTSSSPN NPHHQISQFS  120
SMNHHPLFYG LSDHVSSCNN LPMIPSRFRD SSKTSTSGLE SEFLSSGFSG LSALGLGFSH  180
HMSHDHTING SFINNSTTNK PFLLSGLFGS SVSSSSSTLL QSPHKPINNG GEMMGQSHLQ  240
TLASLQHVGG NNDDMNKERK LDQISGNING FMSSSSLDPS NYNSIWNNAS AVNGACLDQT  300
NNDIGSSLTS LI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03399.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530650.0AK353065.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-D16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447882.10.0PREDICTED: dof zinc finger protein DOF1.4-like
SwissprotQ9FZA41e-144DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBLA0A078JJD91e-162A0A078JJD9_BRANA; BnaCnng51540D protein
TrEMBLA0A0D3D6961e-162A0A0D3D696_BRAOL; Uncharacterized protein
STRINGBo7g048220.11e-163(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47092650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.11e-113Dof family protein