PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03401.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 135aa    MW: 15263.7 Da    PI: 8.9991
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03401.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.19.6e-11120827
                             GGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  8 ffartGtCkyGdrCkFaHgp 27
                             +f++tG CkyG++CkF+H++
  Rsa1.0_03401.1_g00005.1  1 YFLKTGACKYGSTCKFHHPK 20
                             8*****************96 PP
2zf-CCCH30.75.5e-104164326
                             S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                             ++ C+++ +tG C++G  CkF+H+
  Rsa1.0_03401.1_g00005.1 41 EKSCPYYVQTGMCRFGVACKFHHP 64
                             667********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.5120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-5121IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-5119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.925121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-73766IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-43865IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.4793866IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-74064IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-44363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
YFLKTGACKY GSTCKFHHPK DRNGAEPVLF NVLGYPMRQG EKSCPYYVQT GMCRFGVACK  60
FHHPHPQPHN NNGHSTTYGM PTFPYGMMSL PPATYGVMPP PQVPYPQTYM PFIFAPPQGW  120
SPYMVSLNYL CSCLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03401.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1387448e-54AF138744.1 Arabidopsis thaliana zinc finger protein 2 (zfn2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472932.12e-89PREDICTED: zinc finger CCCH domain-containing protein 26-like
SwissprotO487727e-54C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLA0A0D3B4M34e-76A0A0D3B4M3_BRAOL; Uncharacterized protein
STRINGBo3g027010.16e-77(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.12e-47zinc finger nuclease 2