PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03407.1_g00003.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 299aa MW: 33883.3 Da PI: 6.1876

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03407.1_g00003.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.8	7.3e-11	182	225	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ v +L++e + L + Rsa1.0_03407.1_g00003.1 182 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQSEVSVLSPR 225 8999********************************98777655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.7E-13	178	242	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.634	180	232	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.93E-11	182	236	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.0E-13	182	233	No hit	No description
Pfam	PF00170	2.6E-9	182	225	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.37E-24	183	233	No hit	No description
PROSITE pattern	PS00036	0	185	200	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MAQLPPKIPN MTPPHWPNFS SQKLPHFSTA AASSAVQNPS WVDEFLDFSA CRRGNHRRSI 60 SDSIAFLEAP IVTSHMEEHN FDKFDDEQFM SMFTDDDDDL CNHPSHNNKN VGPNDSSLNT 120 STGADHKSFN DDKEPPSHHN MNVNYNNCNE EVTGQCKTEP EDGTESSNNS GDSSGNRIID 180 PKRVKRILAN RQSAQRSRVR KLQYISELER SVTTLQSEVS VLSPRVAFLD HQRLLLNVDN 240 SALKQRIAAL AQDKIFKDAH QESLKREIER LRQVYQQQSF EKMENANHSP ETGVDIKAL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269\|PubMed:17719007, ECO:0000269\|PubMed:19449183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03407.1_g00003.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241104	0.0	AC241104.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH017L09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018474718.1	0.0	PREDICTED: basic leucine zipper 34-like isoform X1
Swissprot	F4IN23	1e-142	BZP34_ARATH; Basic leucine zipper 34
TrEMBL	A0A3N6R2D1	0.0	A0A3N6R2D1_BRACR; Uncharacterized protein
STRING	XP_006411496.1	1e-153	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1753	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	1e-135	bZIP family protein

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]