PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03425.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ZF-HD
Protein Properties Length: 325aa    MW: 35825.3 Da    PI: 7.0716
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03425.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer59.67e-191341722158
              ZF-HD_dimer  21 avDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                               +DGCgEf+ps++ + +++++l+C ACgCHRnFHRre +
  Rsa1.0_03425.1_g00001.1 134 ILDGCGEFIPSSSFNsSDPTSLTCDACGCHRNFHRREDD 172
                              58*********9999899******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF025199.0E-1432105IPR003676Small auxin-up RNA
PROSITE profilePS5152313.817119170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.4E-15133171IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.1E-19133170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-6135170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.17E-16230294IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-25234293IPR009057Homeodomain-like
TIGRFAMsTIGR015652.4E-23237293IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MMKGGNKLMK LKSVLKKLNS FNTKPNQPPT PSYHGRSSSV CAFPLEELHT VYVGRKRRPY  60
HVSSDVVNHP LFQQLAAMDG GCGSEDGSIA VSCEVVLFEH LLWMLENADA DESRPESVHE  120
LVDLGTCLVY RNNILDGCGE FIPSSSFNSS DPTSLTCDAC GCHRNFHRRE DDLSNVSAVV  180
PRIEYRPHNR HQLPPPPLPS VGAGSQDDDD PASPPPISSS YMLLELSGGA TTVPVSRKRF  240
RTKFSEFQKG KMFEFAERVG WRMPKADDVD VVEFCREIGV EKNVFKVWMH NNKIPGRGGA  300
RRANGDGGGG GDGREKNDNV SFSST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-202362961676ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03425.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443190.11e-103PREDICTED: zinc-finger homeodomain protein 8
SwissprotQ9LXG05e-81ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A397XR591e-103A0A397XR59_BRACM; Uncharacterized protein
TrEMBLA0A3P6CV871e-103A0A3P6CV87_BRACM; Uncharacterized protein
STRINGBra008712.1-P8e-94(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.12e-65homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]