PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03426.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 255aa    MW: 27960.3 Da    PI: 4.3727
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03426.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.7e-052042411254
                              HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              R +++++ +  Lr+++P       + ++ a++L +Av+Y+ksL
  Rsa1.0_03426.1_g00001.1 204 RKKKMKKMMGMLRKIVPGG-----EEMNTASVLDEAVQYLKSL 241
                              77899999999******85.....69***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.198192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-7204251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-7204249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MQNNQFPHYS DDMGDGNMNY PYDGNMNYPY PYASASSFDD LFPPCAKLPF HGVELQPSPV  60
CPKNFVIFDQ TYDHNSQVMY HPDLTPRLVN SGLASTFQNE YVGGGYGGSY GNYGQEVVSS  120
SYQEDPNEID ALLSTDEDEE GEEEDGGDSE EVISTARNAS SREYGNTSAE TCYSSYGCNS  180
SSRRKQSSSG SAASSSNNDG KGGRKKKMKK MMGMLRKIVP GGEEMNTASV LDEAVQYLKS  240
LKLEAQKLGH FSNQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182208RRKQSSSGSAASSSNNDGKGGRKKKMK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03426.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893661e-158AC189366.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB046G20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451812.11e-130PREDICTED: transcription factor bHLH144
SwissprotQ9ASX95e-95BH144_ARATH; Transcription factor bHLH144
TrEMBLA0A0D3BIZ21e-118A0A0D3BIZ2_BRAOL; Uncharacterized protein
STRINGBo3g146500.11e-119(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61951626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.22e-77bHLH family protein
Publications ? help Back to Top
  1. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]
  2. Cai Q, et al.
    The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis.
    Plant Cell Physiol., 2016. 57(8): p. 1583-92
    [PMID:27388339]
  3. Yamamoto M,Takahashi T
    Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis.
    Plant Signal Behav, 2017. 12(1): p. e1276685
    [PMID:28045577]