PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03455.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 321aa    MW: 35270.3 Da    PI: 6.7256
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03455.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20140189255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Rsa1.0_03455.1_g00001.1 140 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 189
                              59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.78E-33139199No hitNo description
PROSITE profilePS5103223.169140197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-32140198IPR001471AP2/ERF domain
SMARTSM003801.2E-37140203IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-23140198IPR016177DNA-binding domain
PfamPF008472.1E-14141189IPR001471AP2/ERF domain
PRINTSPR003672.9E-11141152IPR001471AP2/ERF domain
PRINTSPR003672.9E-11163179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEAALNMYNS ITFQQPDSFG GGELMEALVP YINTVSNSSP YPASASAFIQ PAASAFSPSL  60
PTFPGYYPQD YSTYMTQPFS YGSDLQQTAS LTGLNHLSSS QVHQNHNHSN AFSSLLSPKP  120
LLMKQSGAAY GGVPEKPTKL YRGVRQRHWG KWVAEIRLPR NRTRLWLGTF DTAEEAALAY  180
DKAAYKLRGD FARLNFPNLR HSGSHIGGEF GEYKPLHSTV DAKLEAICQS MAEAEKQGKT  240
AATKGSKKRA SKKTEAEKVK AEDNSNAGSP PPATEFVESA GSSPLSDLTF ADTEEPPQCW  300
NETFSLEKYP SYEIDWDKIL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20139197160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03455.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894140.0AC189414.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061K11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456738.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4
SwissprotQ8H1E41e-145RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A397YSV20.0A0A397YSV2_BRACM; Uncharacterized protein
TrEMBLM4DGK90.0M4DGK9_BRARP; Uncharacterized protein
STRINGBra015634.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-116related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]