PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03462.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 258aa    MW: 28725.3 Da    PI: 6.5285
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03462.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF901.2e-28959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+ien   rqvtfskRrng++KKA+ELS+LCdaeva+iifsstgk+y++ss
  Rsa1.0_03462.1_g00003.1  9 KKIENVNSRQVTFSKRRNGLMKKAKELSILCDAEVALIIFSSTGKVYDFSS 59
                             68***********************************************96 PP
2K-box58.52.8e-201041812299
                    K-box  22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                              + +k+e+e Lq  + +l+G++Le +s+ +L +Le+qL++sl +++++K+++ll+q+e+++ ke+++ een+ Lrk++e
  Rsa1.0_03462.1_g00003.1 104 DAMKNELERLQLAIQRLKGKELEGMSFSDLISLENQLNDSLHSVKDQKTQILLNQVERSRLKERRALEENQILRKQVE 181
                              679************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.959161IPR002100Transcription factor, MADS-box
CDDcd002651.19E-41275No hitNo description
SuperFamilySSF554552.09E-31279IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.44296186IPR002487Transcription factor, K-box
PfamPF014864.0E-16104180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRGRIEIKK IENVNSRQVT FSKRRNGLMK KAKELSILCD AEVALIIFSS TGKVYDFSSG  60
CMEQTLSRYG HTAASADHKP KEEEEQLLLC SSQENGAVVL RKDDAMKNEL ERLQLAIQRL  120
KGKELEGMSF SDLISLENQL NDSLHSVKDQ KTQILLNQVE RSRLKERRAL EENQILRKQV  180
EMLGRGSSGP KGLSEIPQFS SPQAEPESSS SDDDDENDLH SDTSLQLGLS SSGYCTKRKK  240
PKIESPCGYN SGSQVASD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-20169169MEF2C
5f28_B4e-20169169MEF2C
5f28_C4e-20169169MEF2C
5f28_D4e-20169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03462.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486852.11e-180PREDICTED: agamous-like MADS-box protein AGL18 isoform X2
SwissprotQ9M2K81e-135AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A0D3DTX61e-165A0A0D3DTX6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GCQ21e-165A0A3P6GCQ2_BRAOL; Uncharacterized protein
STRINGBo8g091790.11e-165(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60612139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-126AGAMOUS-like 18