PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03464.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family E2F/DP
Protein Properties Length: 226aa    MW: 24424.9 Da    PI: 9.4762
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03464.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP82.43.8e-26101183271
                  E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwk 70 
                              ++++Lr+++ k   ++ek+e+  ++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+
  Rsa1.0_03464.1_g00003.1 101 TGRGLRQFSLK---VCEKVESkVRTTYNEVADELVAEfslpnndgtppdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWR 182
                              689********...*****99899*****************************************************.*******9 PP

                  E2F_TDP  71 g 71 
                              g
  Rsa1.0_03464.1_g00003.1 183 G 183
                              8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.9E-4596189IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.1E-33100183IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.32E-20103184IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.5E-24103183IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MTTTPTGSNS NHNSNNNPST TRSSWGTGAQ SVSTSGSVGS PSTTTTTTTL ATTTTTTDSA  60
FLQLNNLDIQ GDDAASQLPS SSSCGKKKKK RGQRASGPDK TGRGLRQFSL KVCEKVESKV  120
RTTYNEVADE LVAEFSLPNN DGTPPDQQQY DEKNIRRRVY DALNVLMAMD IISKDKKEIQ  180
WRGLPRTSLS DIEELKSHPQ PPQHQLPVTN NASAPGTIKS SVKPEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3794188193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03464.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937331e-125AB493733.1 Arabidopsis thaliana At5g03415 mRNA for hypothetical protein, partial cds, clone: RAAt5g03415.
GenBankAJ2945321e-125AJ294532.1 Arabidopsis thaliana mRNA for DP-like protein (dpb gene).
GenBankAK2281481e-125AK228148.1 Arabidopsis thaliana mRNA for transcription factor - like protein, complete cds, clone: RAFL14-61-J08.
GenBankAY0860181e-125AY086018.1 Arabidopsis thaliana clone 206791 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472185.11e-139PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY28e-90DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A397XQY91e-100A0A397XQY9_BRACM; Uncharacterized protein
STRINGBostr.2128s0112.1.p1e-100(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.18e-77Transcription factor DP