PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03479.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 139aa    MW: 15356 Da    PI: 8.4721
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03479.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.42.4e-112072254
                             XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54
                             ++ ++ +rk++NR +ArrsR RK++ ++ L+  v  L  eN++    +   ++
  Rsa1.0_03479.1_g00004.1 20 SDERKRKRKESNRDSARRSRMRKQKHLDDLTAQVTHLRDENSKIVASITVTRQ 72
                             5667899**********************************987766665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-111874No hitNo description
SMARTSM003385.6E-181983IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.8982184IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-122375No hitNo description
PfamPF001703.7E-92371IPR004827Basic-leucine zipper domain
CDDcd147024.72E-202474No hitNo description
PROSITE patternPS0003602641IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MGSPTSGNCS SGIQNYGSES DERKRKRKES NRDSARRSRM RKQKHLDDLT AQVTHLRDEN  60
SKIVASITVT RQHYVTIETE NSVLRAQFLE LDQRLDSLNE IVETAGGFWM ETGQGGGGAI  120
SYGRGGGGFY DGVMNPLSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12227RKRKRK
22228RKRKRKE
32243RKRKRKESNRDSARRSRMRKQK
43542RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03479.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128098.15e-72PREDICTED: bZIP transcription factor 44-like
RefseqXP_013718541.15e-72bZIP transcription factor 44-like
SwissprotC0Z2L51e-58BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A078HNT73e-75A0A078HNT7_BRANA; BnaA02g17180D protein
STRINGBra008192.1-P2e-71(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.18e-54basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]