PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03487.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 205aa    MW: 23218.6 Da    PI: 4.8923
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03487.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.8e-16112162255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a++  + kl+g
  Rsa1.0_03487.1_g00002.1 112 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESDIDAARAYDYEAFKLRG 162
                              7********.**********954..34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.9E-30111171IPR001471AP2/ERF domain
SMARTSM003801.0E-33112176IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22112171IPR016177DNA-binding domain
PROSITE profilePS5103223.96112170IPR001471AP2/ERF domain
CDDcd000184.19E-27112170No hitNo description
PfamPF008473.5E-10112162IPR001471AP2/ERF domain
PRINTSPR003673.3E-12113124IPR001471AP2/ERF domain
PRINTSPR003673.3E-12152172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MATIEESSDL DDIHKHLFED LMMPDGFMED FVFDDADFFS GLWSLEPLNQ VPKQEPGSPV  60
LDPDSYVQEF LQMEAESSST TTTTTTTTTT ASTEVETVSN RKRSKRAEET RHYRGVRRRP  120
WGKFAAEIRD PAKKGSRIWL GTFESDIDAA RAYDYEAFKL RGRKAVLNFP LDAGKYDAPV  180
NSCRKRRRTD VPEPQGTTSS NSSSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-28109171264ATERF1
3gcc_A7e-28109171264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183187RKRRR
2183188RKRRRT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03487.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9918480.0GU991848.1 Brassica napus AP2/ERF transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018483296.11e-151PREDICTED: ethylene-responsive transcription factor ERF107
SwissprotQ9FKG21e-106EF107_ARATH; Ethylene-responsive transcription factor ERF107
TrEMBLM4D8X91e-124M4D8X9_BRARP; Uncharacterized protein
STRINGBra012939.1-P1e-125(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61590.11e-98ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Suh MC,Go YS
    DEWAX-mediated transcriptional repression of cuticular wax biosynthesis in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(8): p. e29463
    [PMID:25763625]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]
  5. Walper E,Weiste C,Mueller MJ,Hamberg M,Dröge-Laser W
    Screen Identifying Arabidopsis Transcription Factors Involved in the Response to 9-Lipoxygenase-Derived Oxylipins.
    PLoS ONE, 2016. 11(4): p. e0153216
    [PMID:27073862]
  6. Ju S,Go YS,Choi HJ,Park JM,Suh MC
    DEWAX Transcription Factor Is Involved in Resistance to Botrytis cinerea in Arabidopsis thaliana and Camelina sativa.
    Front Plant Sci, 2017. 8: p. 1210
    [PMID:28744297]
  7. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]