PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03574.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GRF

Protein Properties

Length: 309aa MW: 33619.7 Da PI: 8.2708

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03574.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.1	3.6e-24	75	117	2	44
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrCrRtDGKkWRCs++v++++k+CErHlhrgr rsrk++e Rsa1.0_03574.1_g00002.1 75 LEPGRCRRTDGKKWRCSKEVVSNHKYCERHLHRGRPRSRKHVE 117 69***************************************97 PP
2	QLQ	50.5	6.2e-18	28	59	2	33
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 +FT+aQl +L++Q+++yKy++a+ PvP +Ll+ Rsa1.0_03574.1_g00002.1 28 PFTNAQLKELERQAMIYKYMIASIPVPVDLLV 59 9*****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.6E-9	27	63	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	5.5E-11	28	58	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	18.671	28	63	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.629	74	118	IPR014977	WRC domain
Pfam	PF08879	1.4E-19	76	117	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010114	Biological Process	response to red light
GO:0010218	Biological Process	response to far red light
GO:0080167	Biological Process	response to karrikin
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
METHPHPHPH VITPYAGNGV MGCYYYYPFT NAQLKELERQ AMIYKYMIAS IPVPVDLLVS 60 SSPPCNNKNA AGGDLEPGRC RRTDGKKWRC SKEVVSNHKY CERHLHRGRP RSRKHVELPY 120 SRPSSSNISC SEKNRVLSSI KDKRVEVSSA RGIEIFPVPA SNEQENKYLN FIDVWSDGVT 180 SSEKQRTPAA ASSPSGNPCL YSLDLSMGGN NLMGQDEMGL RVIGSGRDDP HGYGPYGGGV 240 VSSSLDEMSS WLATTPGGPL AEILRPNPSS AFSGEMEANS LTATPTPSSS PSRVVKKVTG 300 SVSDESSQI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03574.1_g00002.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493791	8e-90	AB493791.1 Arabidopsis thaliana At5g53660 mRNA for hypothetical protein, partial cds, clone: RAAt5g53660.
GenBank	AK176109	8e-90	AK176109.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL22-89-N21.
GenBank	BT010882	8e-90	BT010882.1 Arabidopsis thaliana At5g53660 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018468365.1	0.0	PREDICTED: growth-regulating factor 7
Swissprot	Q9FJB8	1e-151	GRF7_ARATH; Growth-regulating factor 7
TrEMBL	A0A3P6DR96	0.0	A0A3P6DR96_BRAOL; Uncharacterized protein
STRING	Bra022667.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12106	27	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	1e-130	growth-regulating factor 7

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]