PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03592.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HB-other
Protein Properties Length: 316aa    MW: 35163.8 Da    PI: 8.8882
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03592.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.72.9e-061474755
                             --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
                 Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                             f+  +++e+e+   +  +  ps++  e++A+k            ++ +q+ +WFqNrR+  
  Rsa1.0_03592.1_g00002.1 14 FNMAEVTEMEAILLQhhTAMPSRQVLEDIAEKFsgsverkgkiIVQFKQIWNWFQNRRYAL 74
                             66777777787777645778******************999988999***********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500718.794577IPR001356Homeobox domain
SMARTSM003898.8E-4781IPR001356Homeobox domain
SuperFamilySSF466891.36E-91278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-71380IPR009057Homeodomain-like
CDDcd000862.28E-51375No hitNo description
PfamPF167191.2E-9138187IPR032001SAWADEE domain
PfamPF167191.7E-13188237IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGRPPSNGSP AFRFNMAEVT EMEAILLQHH TAMPSRQVLE DIAEKFSGSV ERKGKIIVQF  60
KQIWNWFQNR RYALRAMRNK APGKLNVSST PRGVDMTNQM RNVLPPSAGL KPTHITGNLP  120
VAPSVPGVMS SGSDKCYMEF EAKSARDGAW YDVHDFLDHR NLETGDPEVE VRFAGFEVEE  180
VEWVNVKKHG KDQALYFDAK VLDAQRRRHD IRGCRCRFLV RYSHDQSEEI VPLRKICRRP  240
ETDYRLHQLH SAANDFANSN HLQKPAPDAA ATTPLPQSGA SVPIVPTELK DPSLTSASAT  300
PVQPSSNAAT VPAGSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-271382414134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-271382414134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-271382414134SHH1 SAWADEE
4iur_B2e-271382414134SHH1 SAWADEE
4iut_A2e-271382414134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-271382414134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-271382414134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-271382414134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-271382414134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-271382414134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03592.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489863.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
SwissprotQ8RWJ71e-173SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1J3DXW20.0A0A1J3DXW2_NOCCA; Protein SAWADEE HOMEODOMAIN-like protein 2
STRINGXP_006406611.11e-177(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73992437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-147sequence-specific DNA binding transcription factors;sequence-specific DNA binding