PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03599.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

SRS

Protein Properties

Length: 364aa MW: 37885.7 Da PI: 7.7324

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03599.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	228.9	9.2e-71	136	285	4	152
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalss 88 +++sCqdCGnqakkdCah RCRtCCksrgf+C thv+stWvpaakrrerqqql + + ++ + ++ +kr+r++ +++s+l + Rsa1.0_03599.1_g00002.1 136 NSVSCQDCGNQAKKDCAHVRCRTCCKSRGFQCPTHVRSTWVPAAKRRERQQQLGTVQPQTHLPRgDSGVPKRQRDNLLATSSSLVC 221 5689***********************************************99987776665588899************ PP DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 t+++++++ + le+ ++P+evss+avfrcvrvssv+dgeee+aYqtavsigGhvfkGiLyd+G+ Rsa1.0_03599.1_g00002.1 222 TRIPTHQNASGLEVGDFPAEVSSPAVFRCVRVSSVEDGEEEFAYQTAVSIGGHVFKGILYDNGP 285 *************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.0E-64	137	285	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.7E-26	139	181	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.9E-27	238	285	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MAGFFSLDGG GGGGGGGDAQ EEHRTNRNPP PPVSESWLWY RNPNVNANAN APSSSNAAAL 60 GTLELWQNHN QQEIMFQHHQ QHQQRLDLYS SAAGLGVGPS NHSQFNISGE TSNAGAGGTA 120 AAALMMMRSG GSGGGNSVSC QDCGNQAKKD CAHVRCRTCC KSRGFQCPTH VRSTWVPAAK 180 RRERQQQLGT VQPQTHLPRG DSGVPKRQRD NLLATSSSLV CTRIPTHQNA SGLEVGDFPA 240 EVSSPAVFRC VRVSSVEDGE EEFAYQTAVS IGGHVFKGIL YDNGPGSIGG GGYNVCESSS 300 GGGGAQRMNL ITAGTVTVAT ASSSTPNAGG IGGSSAAYTD PAALYPTPIN TFMAGTQFFP 360 NPRS

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MAGFFSLDGG GGGGGGGDAQ EEHRTNRNPP PPVSESWLWY RNPNVNANAN APSSSNAAAL  60
GTLELWQNHN QQEIMFQHHQ QHQQRLDLYS SAAGLGVGPS NHSQFNISGE TSNAGAGGTA  120
AAALMMMRSG GSGGGNSVSC QDCGNQAKKD CAHVRCRTCC KSRGFQCPTH VRSTWVPAAK  180
RRERQQQLGT VQPQTHLPRG DSGVPKRQRD NLLATSSSLV CTRIPTHQNA SGLEVGDFPA  240
EVSSPAVFRC VRVSSVEDGE EEFAYQTAVS IGGHVFKGIL YDNGPGSIGG GGYNVCESSS  300
GGGGAQRMNL ITAGTVTVAT ASSSTPNAGG IGGSSAAYTD PAALYPTPIN TFMAGTQFFP  360
NPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03599.1_g00002.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU205262	0.0	GU205262.1 Brassica rapa subsp. pekinensis stylish (STY1-1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437405.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9SD40	1e-179	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A3P5YHC6	0.0	A0A3P5YHC6_BRACM; Uncharacterized protein
STRING	Bo8g081900.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-156	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]