PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03642.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 102aa    MW: 11715.1 Da    PI: 9.0544
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03642.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.62.2e-1320961294
                             HTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                       B3 12 ksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                             ++  l++p +f++++    gg+   s t  l++ es r+W+ k+  ++++    l++GW+eF+ an+L+ g +++ +++g++ f  +v
  Rsa1.0_03642.1_g00004.1 20 SHTHLMIPEDFFSKYieeeGGV---SATAELKSdESDRTWKAKI--TGRR----LGDGWREFAVANNLRFGGVILVRYEGDMVF--HV 96
                             44459**********9765444...556777765999*******..8888....************************998888..44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.7299102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-161097IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-151097IPR015300DNA-binding pseudobarrel domain
CDDcd100173.04E-131097No hitNo description
SMARTSM010199.9E-1812102IPR003340B3 DNA binding domain
PfamPF023621.5E-82094IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MAKSRLLLRP QFFHTLLPGS HTHLMIPEDF FSKYIEEEGG VSATAELKSD ESDRTWKAKI  60
TGRRLGDGWR EFAVANNLRF GGVILVRYEG DMVFHVSNXK HF
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03642.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433753.16e-59PREDICTED: B3 domain-containing protein REM13-like
SwissprotP0CAP54e-32REM13_ARATH; B3 domain-containing protein REM13
TrEMBLA0A0D3DVL79e-46A0A0D3DVL7_BRAOL; Uncharacterized protein
STRINGBo8g099680.11e-46(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.12e-34DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Bindschedler LV,Palmblad M,Cramer R
    Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study.
    Phytochemistry, 2008. 69(10): p. 1962-72
    [PMID:18538804]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]