PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03679.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 285aa    MW: 31702.5 Da    PI: 10.1975
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03679.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51.1e-1767151794
                              .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                       B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                               +d+l  gr +++ +f++++g+ k++   ltl  ++g +W+v+++ ++++++  l+kGW+eF+kangLk+g+ ++++l+++ ++ +
  Rsa1.0_03679.1_g00001.1  67 AHDSLIIGRQYVSVPFMRANGMTKPG--LLTLVGKDGVKWKVNIREERSGKALCLGKGWREFAKANGLKTGEYFTLELVWK-NEIP 149
                              56667778889999******998766..7***************99999999**************************995.4435 PP

                              EE CS
                       B3  93 vv 94 
                              ++
  Rsa1.0_03679.1_g00001.1 150 ML 151
                              55 PP
2B342.89.1e-141972821099
                              HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                       B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                                k + l lp +f++++g+kk +   +tl  ++g +W  ++    + g++  + GW++F++ang+k gD++ + +++++++ +v+k
  Rsa1.0_03679.1_g00001.1 197 DVKACTLHLPSEFMTTIGIKKLG--IITLVGKDGMKWWGYI--LSRNGTVAVGIGWRNFCEANGVKLGDSFSLVFIKEEDTGPVFK 278
                              456789***********999655..8***********9999..666778999************************999999**** PP

                              EE-S CS
                       B3  96 vfrk 99 
                              ++ +
  Rsa1.0_03679.1_g00001.1 279 FCPN 282
                              9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.9E-1756151IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.45161157IPR003340B3 DNA binding domain
SMARTSM010191.1E-2661157IPR003340B3 DNA binding domain
PfamPF023624.8E-1664151IPR003340B3 DNA binding domain
CDDcd100173.16E-1766153No hitNo description
SuperFamilySSF1019364.9E-1774154IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-15185282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-16186282IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.448188285IPR003340B3 DNA binding domain
SMARTSM010191.0E-15188283IPR003340B3 DNA binding domain
PfamPF023625.4E-12197282IPR003340B3 DNA binding domain
CDDcd100171.39E-10201280No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MNNSETNCPL ALVTASNVRK DTQFLRQDLC PTESIHDGTQ GDNNKKKRRG RPPTSPSQKQ  60
FMRLKLAHDS LIIGRQYVSV PFMRANGMTK PGLLTLVGKD GVKWKVNIRE ERSGKALCLG  120
KGWREFAKAN GLKTGEYFTL ELVWKNEIPM LSLVNTESTS DKNQRGEPSK AMEKERSTDT  180
SSIVQNRVVT LALETKDVKA CTLHLPSEFM TTIGIKKLGI ITLVGKDGMK WWGYILSRNG  240
TVAVGIGWRN FCEANGVKLG DSFSLVFIKE EDTGPVFKFC PNSGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14448KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03679.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479770.10.0PREDICTED: B3 domain-containing protein REM12-like
SwissprotP0CAP41e-92REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A078JGZ90.0A0A078JGZ9_BRANA; BnaCnng48570D protein
STRINGBo4g154880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142671121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.11e-87B3 family protein