PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03701.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 147aa    MW: 17116.7 Da    PI: 9.4588
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03701.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.78.1e-1152106561
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                              k+ rr  +NR+AA++sR +K+++i++L +k+  L+  +  L++++e+ +++ + l+ 
  Rsa1.0_03701.1_g00002.1  52 KKLRRIVSNRVAAQKSRWKKLQYIDNLVTKSRDLQVNM--LRSQVEMASEQKQCLER 106
                              899*******************************9988..9****999988776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.6E-844106No hitNo description
SMARTSM003382.7E-648110IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.68E-952104No hitNo description
PfamPF001706.5E-852106IPR004827Basic-leucine zipper domain
PROSITE patternPS0003605570IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MSDPSFPVPT SFQVSNGGSQ EEEKKVGYVN YEVEPGFTIR LRQNIDPAMD PKKLRRIVSN  60
RVAAQKSRWK KLQYIDNLVT KSRDLQVNML RSQVEMASEQ KQCLEREQME LKECMSGWLH  120
YFISSQGEIE ANTAEIERLK KKMARMI
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03701.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443367.11e-104PREDICTED: basic leucine zipper 19
TrEMBLM4CYJ11e-92M4CYJ1_BRARP; Uncharacterized protein
STRINGBra009288.1-P2e-93(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144181821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07160.16e-58bZIP family protein