PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03756.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 368aa    MW: 42473.3 Da    PI: 5.9765
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03756.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1227.2e-382169209374
                     GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                              +lh++++e++s++   + +Lk +++l+P++v+++e++ad +s++F  r+ + ++y++  +d+ ++ l   se+r+++E+  +g++i
  Rsa1.0_03756.1_g00004.1   2 MLHYIPHETLSSSR--SFFLKELRDLNPTIVTLIEEDADFTSSNFISRLRSLFNYMWIPYDTADTFLTCGSEQRQWYEAD-IGWRI 84 
                              78999977777666..9***************************************************************.***** PP

                     GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve....eesgslvlgWkdrpLvsvSaWr 374
                               nvva+egaer+er e +++W er++ea F+ v ++e++  ++k++l++++ ++g++ +    ++ + +vl+Wk++++v++SaW+
  Rsa1.0_03756.1_g00004.1  85 DNVVAKEGAERVERLEPKSRWFERMREAEFTGVGFGEEVGREVKTMLEEHAsGWGMKKDvddnDDVERFVLTWKGHSVVFASAWK 169
                              ***************************************************9999888854444467899**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.7751144IPR005202Transcription factor GRAS
PfamPF035142.5E-352169IPR005202Transcription factor GRAS
PfamPF127672.1E-25169368IPR024738Transcriptional coactivator Hfi1/Transcriptional adapter 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0070461Cellular ComponentSAGA-type complex
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MMLHYIPHET LSSSRSFFLK ELRDLNPTIV TLIEEDADFT SSNFISRLRS LFNYMWIPYD  60
TADTFLTCGS EQRQWYEADI GWRIDNVVAK EGAERVERLE PKSRWFERMR EAEFTGVGFG  120
EEVGREVKTM LEEHASGWGM KKDVDDNDDV ERFVLTWKGH SVVFASAWKF LSLKISKSDF  180
DKLIIATVNK ENISLHNALL RGLIKNVCLS NTPPLIKNGL EENVVFQKSL GFDYFPKSPR  240
EGRTQRRFNK DCNGSKAKSQ ITEVVSSSFK QLWSMDDGEE VDQLIRCWRS QPIETPIGIN  300
LRDVINRSRH IGTCSTCYSS HELPDSVSLK KKLEQEIKEE ELEVSVEFAN SFNVGLNVYL  360
KRLIKPCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B4e-1213169313473Protein SHORT-ROOT
5b3h_B3e-1213169259419Protein SHORT-ROOT
5b3h_E3e-1213169259419Protein SHORT-ROOT
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03756.1_g00004.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076452e-38AB007645.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8K14.
GenBankCP0026882e-38CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ4471152e-38DQ447115.1 Arabidopsis thaliana clone pENTR221-At5g67410 hypothetical protein (At5g67410) gene, complete cds.
GenBankDQ6533952e-38DQ653395.1 Arabidopsis thaliana clone 0000009946_0000006680 unknown gene.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.17e-66GRAS family protein