PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03794.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 140aa    MW: 15547.3 Da    PI: 6.5024
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03794.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.46.9e-15221011197
                              HHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                       B3  11 lksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                              + ++ l++p  f+++h  +++    kt +l++  s ++W vk+  ++ +    lt+GWk+F++ ++L+ gD+++F+++g++ f  +
  Rsa1.0_03794.1_g00003.1  22 FHTH-LSVPIAFFAKHlqESN-DHIKTAKLRTdASAKTWLVKV--DGLK----LTDGWKDFADGHDLQIGDIIIFRHEGEMVF--H 97 
                              4455.99*********97333.34457777765888*******..6666....***********************9998888..8 PP

                              EEEE CS
                       B3  94 vkvf 97 
                              v++f
  Rsa1.0_03794.1_g00003.1  98 VTAF 101
                              8777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-228106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-219111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.60311104IPR003340B3 DNA binding domain
CDDcd100179.29E-1812101No hitNo description
SMARTSM010192.6E-1914104IPR003340B3 DNA binding domain
PfamPF023624.3E-102498IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MADQSLHAPT NPHFFQPLLP GFHTHLSVPI AFFAKHLQES NDHIKTAKLR TDASAKTWLV  60
KVDGLKLTDG WKDFADGHDL QIGDIIIFRH EGEMVFHVTA FGPSCCDIQY TSASSHNIND  120
DSHDQTTNNN GHIASGSRMN
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03794.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489775.11e-101PREDICTED: B3 domain-containing protein REM7-like
SwissprotQ84WP34e-55REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A397XYM37e-74A0A397XYM3_BRACM; Uncharacterized protein (Fragment)
STRINGBra024695.1-P1e-74(Brassica rapa)
STRINGBra024697.1-P4e-74(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.12e-57B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]