PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03795.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 444aa    MW: 49827.8 Da    PI: 6.2781
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03795.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS512.31.9e-156544411374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lLl+cA++v+sg+l++a+a+L +ls+l+sp gd+mqR+aayfteALa+r+++s+++lykal++++t+++n+see+++++lf++
  Rsa1.0_03795.1_g00002.1  54 LIHLLLTCANHVASGSLQNANAALDQLSHLVSPGGDTMQRVAAYFTEALANRILKSWPGLYKALNATQTRTNNVSEEVHVRRLFFD 139
                              689*********************************************************************************** PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                              ++Pilk+s+l++N+aIlea+ege++vH+iD+ +s+++QW+aL+qa++sRpegpp+lRiTgv++    +ke l ++++rL + Ae+l
  Rsa1.0_03795.1_g00002.1 140 MFPILKVSYLLTNRAILEAMEGEKMVHVIDLHASEPAQWLALIQAFNSRPEGPPHLRITGVHR----HKEVLDQMAHRLIEEAEKL 221
                              ***************************************************************....9****************** PP

                     GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.................desvsles..erdevLklvkslsPkvv 239
                              ++pf+fn+ v+++l++l++e+L vk+gEalaV++vlqlh++l                 ++s++l +  ++d++L+++++lsPkv+
  Rsa1.0_03795.1_g00002.1 222 DIPFQFNP-VVSSLDCLDVEQLPVKTGEALAVSSVLQLHNFLasdvnnnnnghslsgdsASSLPLFNsgKIDSFLNAIWGLSPKVM 306
                              ********.799********************************************99866666655579999************* PP

                     GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                              vv+eq++dhn+++++er+le+l++y+alfd+le+k+pr+s++r+kvE++++g+ei++++aceg+errerhe+lekW++r++  GF+
  Rsa1.0_03795.1_g00002.1 307 VVTEQDSDHNGSTLMERLLESLYTYAALFDCLETKVPRTSQDRMKVEKMVFGEEIKDIIACEGSERRERHEKLEKWSQRFDFDGFG 392
                              ************************************************************************************** PP

                     GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              +vpls++a+ qa++ll+ +++dgyr++eesg++v++W+drpL+svSaWr
  Rsa1.0_03795.1_g00002.1 393 NVPLSYFAMLQARRLLQGYGFDGYRIKEESGCAVICWQDRPLYSVSAWR 441
                              ************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.39628421IPR005202Transcription factor GRAS
PfamPF035146.4E-15454441IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MVATFQEDKV TSSVASSPLQ VFSTMSLTRP PTLLLSSPSS PFQDLKPEER GLFLIHLLLT  60
CANHVASGSL QNANAALDQL SHLVSPGGDT MQRVAAYFTE ALANRILKSW PGLYKALNAT  120
QTRTNNVSEE VHVRRLFFDM FPILKVSYLL TNRAILEAME GEKMVHVIDL HASEPAQWLA  180
LIQAFNSRPE GPPHLRITGV HRHKEVLDQM AHRLIEEAEK LDIPFQFNPV VSSLDCLDVE  240
QLPVKTGEAL AVSSVLQLHN FLASDVNNNN NGHSLSGDSA SSLPLFNSGK IDSFLNAIWG  300
LSPKVMVVTE QDSDHNGSTL MERLLESLYT YAALFDCLET KVPRTSQDRM KVEKMVFGEE  360
IKDIIACEGS ERRERHEKLE KWSQRFDFDG FGNVPLSYFA MLQARRLLQG YGFDGYRIKE  420
ESGCAVICWQ DRPLYSVSAW RCRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-66374431380Protein SCARECROW
5b3h_D1e-66374431380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03795.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893010.0AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486644.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_018486645.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A397YC940.0A0A397YC94_BRACM; Uncharacterized protein
TrEMBLM4DCN50.0M4DCN5_BRARP; Uncharacterized protein
STRINGBra014251.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]