PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03798.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 409aa    MW: 45630.2 Da    PI: 6.0434
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03798.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.51.6e-2063157499
                              E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                       B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                              + ++ ++l ++ l+lp +f+ ++g k  + ++++l de+ rsW + l+++k+s+++++ +GW++F+++ng k+g  + Fkl+ r+e
  Rsa1.0_03798.1_g00002.1  63 ASVTVSNLHEDSLCLPPDFTISNGFKR-KCRKIVLADERERSWALDLRFNKSSDTFYINRGWRNFCEENGKKAGSLFKFKLIMRNE 147
                              556788999999***********8775.567***************************************************9999 PP

                              E..EEEEE-S CS
                       B3  90 felvvkvfrk 99 
                              ++++++v+ +
  Rsa1.0_03798.1_g00002.1 148 ETPLLSVCPT 157
                              99***99975 PP
2B355.11.3e-17185279199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              f++ ++++d+lks+rl+lp +f++e+g++k++  ++tl  ++g +   +l  r +sgr+ l+kG k+F++angL+ gD+++++l++
  Rsa1.0_03798.1_g00002.1 185 FVTLTLTNDSLKSSRLYLPLPFLKENGMDKPG--MVTLLGKDGTRRLANL-LRENSGRMSLGKGLKDFARANGLNMGDSFTLELIW 267
                              7788899********************99766..8********9999999.699999***************************** PP

                              SSEE..EEEEE-S CS
                       B3  87 rsefelvvkvfrk 99 
                               +++++v++++++
  Rsa1.0_03798.1_g00002.1 268 -ENATPVLSLLST 279
                              .888899988765 PP
3B365.96e-21287381199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              f++ +++ d++k++rl lp +f++e+g+++++  t+ l  ++g +W  +l  r ++gr+ l+kGWk+F++angL++g++++++ ++
  Rsa1.0_03798.1_g00002.1 287 FVTLTLTQDSFKNSRLGLPLPFMRENGMNEPG--TIALLGKDGTKWMTNL-LRESQGRMSLGKGWKDFARANGLEVGESFTLESIW 369
                              7788899********************99665..8***************.6888888*************************999 PP

                              SSEE..EEEEE-S CS
                       B3  87 rsefelvvkvfrk 99 
                               +++++++++ ++
  Rsa1.0_03798.1_g00002.1 370 -EGATPMLGLSSR 381
                              .888899998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-1952156IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-1855157IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.14260158IPR003340B3 DNA binding domain
CDDcd100171.23E-1760148No hitNo description
SMARTSM010191.9E-2361158IPR003340B3 DNA binding domain
PfamPF023621.4E-1862156IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-19175275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-18181277IPR015300DNA-binding pseudobarrel domain
CDDcd100171.63E-16184278No hitNo description
PROSITE profilePS5086312.069185280IPR003340B3 DNA binding domain
SMARTSM010193.1E-27185280IPR003340B3 DNA binding domain
PfamPF023625.6E-17185278IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.7E-21280385IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-22283381IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-18286378No hitNo description
PROSITE profilePS5086315.115287382IPR003340B3 DNA binding domain
SMARTSM010191.7E-29287382IPR003340B3 DNA binding domain
PfamPF023622.5E-20287381IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MLSGLGPNNE DQDKMGYISR KKHPITEEGD DDQDNTGNKK VKTNSPNTEA DSSSSSDNSC  60
FVASVTVSNL HEDSLCLPPD FTISNGFKRK CRKIVLADER ERSWALDLRF NKSSDTFYIN  120
RGWRNFCEEN GKKAGSLFKF KLIMRNEETP LLSVCPTESI SDGTQGDENN PQRCRDSTSP  180
NQNRFVTLTL TNDSLKSSRL YLPLPFLKEN GMDKPGMVTL LGKDGTRRLA NLLRENSGRM  240
SLGKGLKDFA RANGLNMGDS FTLELIWENA TPVLSLLSTE FRSQNRFVTL TLTQDSFKNS  300
RLGLPLPFMR ENGMNEPGTI ALLGKDGTKW MTNLLRESQG RMSLGKGWKD FARANGLEVG  360
ESFTLESIWE GATPMLGLSS RESKSEKVSV STEPNIGNET KKDENNIEE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03798.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475790.10.0PREDICTED: B3 domain-containing protein REM12
SwissprotP0CAP41e-120REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A3P6APF30.0A0A3P6APF3_BRAOL; Uncharacterized protein
STRINGBra000545.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.11e-116B3 family protein