PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03798.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 1090aa    MW: 121098 Da    PI: 7.4573
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03798.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.6e-19113202497
                              E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                       B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               ++ +   +++rl+lp +f +e+g++k++  ++ l+  +g +W  +l    ++gr++ ++GWk+FvkangLk g++ +++l++ ++
  Rsa1.0_03798.1_g00003.1 113 FTLAPVDVRHCRLRLPMQFSRENGINKPG--KVYLMGNDGSKWLANL-LLESRGRMTVGDGWKSFVKANGLKIGESYTLELNW-ED 194
                              5556667899**************99776..7***************.6777788899***********************99.78 PP

                              E..EEEEE CS
                       B3  90 felvvkvf 97 
                              +++v++++
  Rsa1.0_03798.1_g00003.1 195 TTPVLSLY 202
                              88888765 PP
2B364.31.9e-20256348197
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              f++ ++++d+l++grl+lp +f++e++++   + ++tl  ++g +W   l    ++gr+ l+kGWk+F+kangLk+gD+++++ ++
  Rsa1.0_03798.1_g00003.1 256 FLTLTITPDSLRHGRLRLPLEFMTENSMNR--PGDITLLGKDGAKWLASLL-LERRGRMCLGKGWKDFAKANGLKTGDSITLESIW 338
                              778899********************9885..558***************6.55556778***********************999 PP

                              SSEE..EEEEE CS
                       B3  87 rsefelvvkvf 97 
                               ++ ++v++++
  Rsa1.0_03798.1_g00003.1 339 -EDSTPVLRLL 348
                              .6666777665 PP
3B357.13.4e-185556321798
                              E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                       B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                              +lp +f++e+g++k++  ++ l  ++g +W  +l    ++gr++l++GWk+FvkangLk+g+++++kl++ +++++v++++ 
  Rsa1.0_03798.1_g00003.1 555 RLPMQFTRENGINKPG--KIYLLGKDGSKWLANL-LVESRGRMTLGDGWKSFVKANGLKTGESFTLKLNW-EDTTPVLSLCP 632
                              59*********99776..8***************.577778899************************99.88889999986 PP
4B372.84.1e-23699792198
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              f++ ++++d+lk+grl+lp +f++e++++k++  ++tl  ++g +W v l    k+gr+ l+kGWk+F+kangLk+gD+++F+ ++
  Rsa1.0_03798.1_g00003.1 699 FLTLTITPDSLKHGRLRLPLEFMTENNMNKPG--DITLLGKDGVKWLVSLL-LEKRGRMSLGKGWKDFAKANGLKTGDSITFESIW 781
                              778899********************999766..7***************5.66667889***********************999 PP

                              SSEE..EEEEE- CS
                       B3  87 rsefelvvkvfr 98 
                               +++++v++++r
  Rsa1.0_03798.1_g00003.1 782 -ENATPVLSLLR 792
                              .88889998887 PP
5B347.43.5e-15848935798
                              .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                       B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                              ++   + + + lp +f+ ++g+ +++  ++tl  +sg +W  +l    k+g++ l++GWk+F++ang+ +g+++v++++ ++++ +
  Rsa1.0_03798.1_g00003.1 848 TPEGVRDCKMQLPSQFMWTNGIMNPG--KITLLGRSGMKWFAYL--LSKDGTIALENGWKGFCEANGVMVGESFVLEFIPTEGADY 929
                              566678899***********877544..8***************..9999****************************98899999 PP

                              EEEEE- CS
                       B3  93 vvkvfr 98 
                              v+k+++
  Rsa1.0_03798.1_g00003.1 930 VFKFYS 935
                              998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-20103204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-20108204IPR015300DNA-binding pseudobarrel domain
CDDcd100172.53E-16109203No hitNo description
SMARTSM010198.5E-28110205IPR003340B3 DNA binding domain
PfamPF023621.5E-18110202IPR003340B3 DNA binding domain
PROSITE profilePS5086314.804110205IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-21245357IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-22252351IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-18256349No hitNo description
SMARTSM010191.3E-29256351IPR003340B3 DNA binding domain
PfamPF023627.4E-20256348IPR003340B3 DNA binding domain
PROSITE profilePS5086315.481256351IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-18502522IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-24545634IPR003340B3 DNA binding domain
PfamPF023622.5E-17555632IPR003340B3 DNA binding domain
SuperFamilySSF1019367.85E-18555637IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-18555632IPR015300DNA-binding pseudobarrel domain
CDDcd100172.44E-15555632No hitNo description
PROSITE profilePS5086313.253556634IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-22692797IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-23695790IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-33699794IPR003340B3 DNA binding domain
PfamPF023623.0E-22699792IPR003340B3 DNA binding domain
CDDcd100171.04E-20699792No hitNo description
PROSITE profilePS5086316.849699794IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-15838923IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-17840924IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-12841934No hitNo description
PROSITE profilePS5086312.576842937IPR003340B3 DNA binding domain
SMARTSM010193.0E-18842937IPR003340B3 DNA binding domain
PfamPF023622.2E-13847935IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1090 aa     Download sequence    Send to blast
MMFQVSDVGH SYCKIRDVEI PSSNNGQDNI GSMKKHPYPR QEAGFSSNND ELPRKKNNPE  60
NEAGSSSTHT YTPVFLTQDF TSLGGLKRKC DKKCSPKRII SSDSSMGTRF VTFTLAPVDV  120
RHCRLRLPMQ FSRENGINKP GKVYLMGNDG SKWLANLLLE SRGRMTVGDG WKSFVKANGL  180
KIGESYTLEL NWEDTTPVLS LYPTAVHSVG IRAEGECSEA SENESLPIKH RCGTEVIKYE  240
NRKDERSSSS GSQNRFLTLT ITPDSLRHGR LRLPLEFMTE NSMNRPGDIT LLGKDGAKWL  300
ASLLLERRGR MCLGKGWKDF AKANGLKTGD SITLESIWED STPVLRLLND RRQQAECSKA  360
REKESAFTEP SSGNRREESS IYPLRRLDSS LVNQNRFETS TLFPEIVRHG AHDYQIGEIV  420
VFRDEGDMMF QVSDLGPRFS EIQNVLPPSS NNDQENIGSV SIIRKERGFS LYDGDGHDQY  480
KIELPLKKKV KKNNPGTEAD PSSERSSFVA HVTASNLRTD ALHLPQEFTS SNSPTQIYSS  540
SEKQLATFTL APVERLPMQF TRENGINKPG KIYLLGKDGS KWLANLLVES RGRMTLGDGW  600
KSFVKANGLK TGESFTLKLN WEDTTPVLSL CPPESNIDSR EGGECSEAIE KEPLPIVPTT  660
NGKEISKEGE NSKKESSSWE RETNLLEWGD STILSQNRFL TLTITPDSLK HGRLRLPLEF  720
MTENNMNKPG DITLLGKDGV KWLVSLLLEK RGRMSLGKGW KDFAKANGLK TGDSITFESI  780
WENATPVLSL LRVESNNDSE VSKQSGFNSG NKTRKAENSR EVSRSRDLEK IRELSSAIQS  840
RIVILTLTPE GVRDCKMQLP SQFMWTNGIM NPGKITLLGR SGMKWFAYLL SKDGTIALEN  900
GWKGFCEANG VMVGESFVLE FIPTEGADYV FKFYSNYGYH IQKCVMWSMV ELHAADSCGQ  960
KFCVVNDVIK DAPLFVHFVE LVVTVGSRMV MISVERKYVS DGVYLTVGCE GGVRGNDGEG  1020
KELQLCGSFA SAVASLFRWT VGLGSPMWLL SVKGEQSVLV CEIGGGSVML RGEDEAVVGD  1080
VAGGDLGGTR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03798.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475785.10.0PREDICTED: B3 domain-containing protein REM-like 1 isoform X3
SwissprotQ8S8E80.0REML1_ARATH; B3 domain-containing protein REM-like 1
TrEMBLA0A0D3B7J30.0A0A0D3B7J3_BRAOL; Uncharacterized protein
STRINGBo3g042160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150791619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.11e-177B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]