PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03817.1_g00003.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 252aa MW: 28950.1 Da PI: 5.6635

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03817.1_g00003.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.3	1.2e-07	127	172	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P +Kl+ ae+ + A +Y+k Lq Rsa1.0_03817.1_g00003.1 127 QSMAARERRRRIAEKTHELTKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 172 567889****************86.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.67E-11	120	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.728	122	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-10	125	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-5	127	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-8	128	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.21E-4	144	175	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MDCLSHFFNW DPPIQLQDCF IPDMDMVIPE TDSFFFQTXX XXXXXXXXXX XXXXXXXXXX 60 XXXXXXXXXX SSYHCNTHTH TQFPNPNLDF LPEASVFPEF RVQDFPLVLK AGLGDQDGAK 120 KPKLSSQSMA ARERRRRIAE KTHELTKLIP GGQKLNTAEM FQAAAKYVKF LQSQVGILQM 180 MQTTKKTQGI TDVEIETQFL LESQAVQEKL STKEVCLVPC EMVRDLTSED SIWRNPKISR 240 EINKLLSTDL AN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03817.1_g00003.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189655	1e-125	AC189655.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012M03, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018475518.1	1e-114	PREDICTED: transcription factor bHLH53-like
Swissprot	Q84RD0	1e-80	BH053_ARATH; Transcription factor bHLH53
TrEMBL	A0A0D3B4Y1	1e-110	A0A0D3B4Y1_BRAOL; Uncharacterized protein
STRING	Bo3g028090.1	1e-111	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4547	25	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	2e-81	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]