PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03858.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 350aa    MW: 39414.1 Da    PI: 8.8562
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03858.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP141.37.7e-441032303133
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasns 85 
                              +k+drhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k++ik+  ++ + s+        ++++ ++s  
  Rsa1.0_03858.1_g00001.1 103 KKRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKPSKTIEWLISKSKASIKQVKESAAASE--GgggGGKHEHLQVS-- 184
                              699************************************************************55555..22353333333333.. PP

                      TCP  86 ssgkaaksaa.kskksqksaasalnlakesrakarararertrekmrik 133
                                 ++a++++ k +k++++    + ++kesr+kar+rarert  km+++
  Rsa1.0_03858.1_g00001.1 185 ---ENANDETlKVSKRKTKRVDDSCKKKESREKARERARERTMVKMKMR 230
                              ...3344444377777777777788899*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.8E-36103229IPR005333Transcription factor, TCP
PROSITE profilePS5136935.549104162IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.015209226IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MFPSIDTNGY DLFDPFSLHE ATMLPSFTTH IQSPSSHHHY PLPSFPFSSD FLDESVLISK  60
FLLQQQDDVD SPRKFCKELE QEKNNEWVDG TTSEKVSPRR TGKKRDRHSK ICTAQGPRDR  120
RMRLSLQIAR KFFDLQDMLG FDKPSKTIEW LISKSKASIK QVKESAAASE GGGGGGKHEH  180
LQVSENANDE TLKVSKRKTK RVDDSCKKKE SREKARERAR ERTMVKMKMR LSGLVDTSKT  240
FSDPNQESRK TKVTGGAQVE GQNLEQERSA TNLNMDSVSI IEKFLGLTSE SSSTIFGDSE  300
ESYTSLGLIR GTVSTAGVVI PREHNTTSTA SVDKERNHIS TFSLYDYLCN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth. May also delay early axillary bud development. Probably involved in the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03858.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469472.10.0PREDICTED: transcription factor TCP12
SwissprotA0AQW41e-141TCP12_ARATH; Transcription factor TCP12
TrEMBLA0A291I3370.0A0A291I337_BRARR; TCP12
TrEMBLA0A398AAA80.0A0A398AAA8_BRACM; Uncharacterized protein
STRINGBo2g061250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116322533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-123TCP domain protein 12