PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03869.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 118aa    MW: 13304.2 Da    PI: 5.8868
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03869.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.72.7e-0513531055
                             HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                             + R d++ ++ + L++l+ +      +K + a++L +A++YI+ Lq
  Rsa1.0_03869.1_g00001.1 13 KERKDKVGERVSALQQLVSPY-----GKTDTASVLLEAMQYIQFLQ 53
                             567788888999999999998.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.0E-9366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.338352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00431158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.08E-61357No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MKRHKSDLSF SSKERKDKVG ERVSALQQLV SPYGKTDTAS VLLEAMQYIQ FLQEQVKVLS  60
APYLQTSPTI TQEELEEYSL RSRGLCLVQM EYTLGIAQSN GADIWAPVKT PTYPAFDV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03869.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5760412e-85AJ576041.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH-beta gene).
GenBankBT0109112e-85BT010911.1 Arabidopsis thaliana At2g31730 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474658.15e-82PREDICTED: transcription factor bHLH113-like
SwissprotQ7XJU22e-70BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A0D3B4G32e-77A0A0D3B4G3_BRAOL; Uncharacterized protein
STRINGBo3g026410.14e-78(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.57e-73bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]