PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03898.1_g00007.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 254aa MW: 29374 Da PI: 8.9948

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03898.1_g00007.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.2	7.9e-50	14	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeelvv+yL +kv+g +l++ vi+e+di+k+ePwdLp + ++e yfFs+r+ ky++g+r+nr+t sgyWkat Rsa1.0_03898.1_g00007.1 14 LPPGFRFHPTDEELVVQYLSRKVSGLPLPA-YVIPEIDICKTEPWDLPG---GCDSERYFFSTREAKYPNGNRSNRSTGSGYWKAT 95 79*************************9.89***********4...45789************************* PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g d+++ + ++ g+kktLvfykg+ p+g++t+Wv+heyrl Rsa1.0_03898.1_g00007.1 96 GIDRQIGK---NVFGMKKTLVFYKGKPPNGTRTNWVLHEYRL 134 **77...89*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.8E-58	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	56.236	14	156	IPR003441	NAC domain
Pfam	PF02365	2.6E-26	15	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MEKRSSIENR KMRLPPGFRF HPTDEELVVQ YLSRKVSGLP LPAYVIPEID ICKTEPWDLP 60 GGCDSERYFF STREAKYPNG NRSNRSTGSG YWKATGIDRQ IGKNVFGMKK TLVFYKGKPP 120 NGTRTNWVLH EYRLVDSQHG SYGENTNWVL CRVFLKNRSN NNSKKKENER EEKKEGRERD 180 DNKSTCPIFY DFLGNDVKNR RCCDLNLTRT FCCCSSSASS SVCSSALTQT SFNIDSDNHH 240 EEISCRENKF RLFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-51	11	159	17	171	NAC domain-containing protein 19
3swm_B	4e-51	11	159	17	171	NAC domain-containing protein 19
3swm_C	4e-51	11	159	17	171	NAC domain-containing protein 19
3swm_D	4e-51	11	159	17	171	NAC domain-containing protein 19
3swp_A	4e-51	11	159	17	171	NAC domain-containing protein 19
3swp_B	4e-51	11	159	17	171	NAC domain-containing protein 19
3swp_C	4e-51	11	159	17	171	NAC domain-containing protein 19
3swp_D	4e-51	11	159	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269\|PubMed:24243147}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03898.1_g00007.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM975668	0.0	KM975668.1 Brassica napus NAC transcription factor 41.1 (NAC41.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437718.1	1e-153	PREDICTED: NAC domain-containing protein 41-like
Swissprot	O22798	1e-109	NAC41_ARATH; NAC domain-containing protein 41
TrEMBL	A0A078FWR0	1e-130	A0A078FWR0_BRANA; BnaA05g10110D protein
TrEMBL	A0A397ZCD5	1e-130	A0A397ZCD5_BRACM; Uncharacterized protein
TrEMBL	M4CMQ4	1e-130	M4CMQ4_BRARP; Uncharacterized protein
STRING	Bra005492.1-P	1e-131	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1806	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.1	1e-103	NAC domain containing protein 41

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]