PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03930.1_g00003.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HSF

Protein Properties

Length: 309aa MW: 35506.5 Da PI: 8.1969

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03930.1_g00003.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	38.2	3.8e-12	13	96	2	89
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 F +ly+i+ed++ +++isws +n+nsf+v+d +++ +++L k +n+ F+ +L gFk v + ++ eF+h+ F Rsa1.0_03930.1_g00003.1 13 FYLHLYQIVEDRSSDQIISWSkSNNNSFIVWDLKRLRSDILLKfsSVLGRNLPEFLAKLRSHGFKPVFKGPGE-------LEFEHDDF 93 8889***************8999************982234579*************999988.......9****9 PP XXX CS HSF_DNA-bind 87 kkg 89 ++ Rsa1.0_03930.1_g00003.1 94 ARS 96 875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.9E-13	9	96	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.6E-8	9	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.36E-10	10	96	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.7E-9	13	97	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MVCKLPTGSF SSFYLHLYQI VEDRSSDQII SWSKSNNNSF IVWDLKRLRS DILLKFSSVL 60 GRNLPEFLAK LRSHGFKPVF KGPGELEFEH DDFARSPLMK KMMAKALSDR IERFDAQIKT 120 LKCRLKAKKA SIKSLELSYS TLQERRRFLA AKAKLEDCQH LGTQSSKPSQ FTEYPQESMF 180 KNQELCAYDQ TNNFQHLCFS NTPDHSSAQE SGLHYQLMPY GGYDQNMCMG NININEFTRN 240 TQDYSLLPPL ELRESMGNYG LNQLMQNMAL IRICDPYGGN PSFSQDFPDM LSSCVYENRL 300 LQASTLPSL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03930.1_g00003.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3839	14	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77570.1	7e-24	Winged helix-turn-helix transcription repressor DNA-binding