PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03953.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 364aa    MW: 39068.2 Da    PI: 6.7407
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03953.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-1397142247
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              ++WT+eE+  ++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
  Rsa1.0_03953.1_g00003.1  97 NPWTEEEHRMFLMGLQKLGKGDWRGISRSYVTTRTPTQVASHAQKY 142
                              69*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.878320IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.101.1E-4321IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.54991147IPR017930Myb domain
SuperFamilySSF466893.96E-1793148IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-1894146IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.8E-1195141IPR009057Homeodomain-like
SMARTSM007176.1E-1195145IPR001005SANT/Myb domain
PfamPF002492.9E-1197142IPR001005SANT/Myb domain
CDDcd001672.22E-998143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MTRRCSHCNQ NGHNSRTCPN RGVKLFGVRL TEGSIRKSAS MGNLSHYSGS GLSGLGGAGS  60
NNPGSPGDGH DHGVGDGYAS EDFVPGSSSS RERKKGNPWT EEEHRMFLMG LQKLGKGDWR  120
GISRSYVTTR TPTQVASHAQ KYFIRQSNVS RRKRRSSLFD MIPDELTDVM VDSSQEQQAE  180
DVPMETQIQS TDSVPAPLIP ETEECESMKS TNSSAEEPPT VTASSSSFTP EDTIQTQLQV  240
QPPPGSFPVM YPTYFSPFYS FPFPVWPAAY VTEPAKEETH EILRPTAVHS KAAPINVDQL  300
LGMSKLSLGE TGQNGVSEQS LSLKLVGGSS SRQSAFHPNP ASGGGGGGGG SDMNTVIHAV  360
QKSA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03953.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623070.10.0PREDICTED: uncharacterized protein LOC106329015
SwissprotQ9LVS01e-172KUA1_ARATH; Transcription factor KUA1
TrEMBLQ2A9C40.0Q2A9C4_BRAOL; Myb family transcription factor
STRINGBo1g051550.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34262759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-134MYB_related family protein
Publications ? help Back to Top
  1. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]