PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03956.1_g00007.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 292aa MW: 31750.3 Da PI: 10.0298

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03956.1_g00007.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.5	1.9e-15	131	182	4	55
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +kr +r+ +NRe+ArrsR+RK+a + eLe+ v +L eN+ L k l +++ Rsa1.0_03956.1_g00007.1 131 VKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSNLMKGLTDVTQT 182 79****************************************9988777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.6E-17	128	192	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.841	130	193	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.6E-11	130	182	No hit	No description
Pfam	PF00170	1.9E-13	131	178	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.8E-12	132	181	No hit	No description
PROSITE pattern	PS00036	0	135	150	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	2.2E-13	199	243	IPR020983	Basic leucine-zipper, C-terminal
Pfam	PF12498	1.7E-6	238	287	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
SSGTNRSESE WAFHRFLQES SDASAGVAAT ASVSGPSSPV DSHEYREILK SKLNLAYAAV 60 VAMKRGGFIK PQDTSGRSEN GGGAYTSDQG SLASPKATPV MSSTITSGSE LSGDEEEEEA 120 DGETNMNPTN VKRVKRMLSN RESARRSRRR KQAHLSELET QVSQLRVENS NLMKGLTDVT 180 QTFNDASVEN RVLKANLETL RAKVKMAEET VKRITGFNPM FHTMPQVSSV SNLSETSNSL 240 GTSSQVTTPE TPSSSNNKSK ALIGCKMNRT ESMRRVASLE HLQKRIRSVG DK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	151	RRSRRRKQ
2	146	151	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in controlling responses to starvation (PubMed:26263501). BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000269\|PubMed:26263501, ECO:0000269\|PubMed:29348240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03956.1_g00007.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly repressed by glucose. {ECO:0000269\|PubMed:18841482}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018477740.1	0.0	PREDICTED: basic leucine zipper 63-like
Swissprot	B9DGI8	1e-145	BZP63_ARATH; Basic leucine zipper 63
TrEMBL	A0A397Z944	1e-168	A0A397Z944_BRACM; Uncharacterized protein
STRING	Bra010010.1-P	1e-168	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6846	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	1e-121	bZIP family protein

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mair A, et al. SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants. Elife, 2016. [PMID:26263501] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]