PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03962.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 246aa MW: 26911.5 Da PI: 8.7699

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03962.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.5	1.6e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlr++C+++C l+p++ +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Ga+g+++ Rsa1.0_03962.1_g00002.1 2 SCNGCRVLRKGCSENCLLRPCIqwietADAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFKSLLYEACGRTVNPVNGAIGMLW 87 6*******************9998666789************************************************** PP DUF260 82 klqqqleqlkaelall 97 +++++++q+++e++l+ Rsa1.0_03962.1_g00002.1 88 TGNWKICQAAVETVLR 103 ********999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.581	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCLLR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PALFKSLLYE ACGRTVNPVN GAIGMLWTGN WKICQAAVET VLRGGSLRPV PEILLTHGGG 120 FAGFPPSASE EASEMCTEML KLQQNNDGSR DRNMYHHSRF SSSRSRSMLD SSPTKRKRQS 180 SELDISVNPT FPMKTMTSST RQRSVTPSMN SEESVTTTTT FWDNTASGSR YGNGGGETSK 240 LLDLFV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03962.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018454565.1	0.0	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9FN11	1e-128	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A291LR19	1e-136	A0A291LR19_BRARR; Transcription factor LBD37b
TrEMBL	A0A397YK28	1e-136	A0A397YK28_BRACM; Uncharacterized protein
TrEMBL	M4D6Q4	1e-136	M4D6Q4_BRARP; Uncharacterized protein
STRING	Bra012164.1-P	1e-137	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-129	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]