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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Rsa1.0_03981.1_g00004.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 342aa MW: 38320.4 Da PI: 9.507 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_03981.1_g00004.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 389.8 | 3.9e-119 | 1 | 342 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdn 79
mdd g+r+ r+k+ + + ++ +s+ +q+ms+iaerda+i+ernla+se+k+avaerdmaflqrd+a+aern+a++erd+
Rsa1.0_03981.1_g00004.1 1 MDDGGHRDngRHKApQGQwmmQHqPSM-----KQVMSIIAERDAAIQERNLAISERKSAVAERDMAFLQRDTAIAERNNAIMERDS 81
999999888888873211222222444.....5***************************************************** PP
GAGA_bind 80 kllalllvensla..........salpvgvqvlsgtksidslqqlse.....pqledsave.lreeeklealpieeaaeeakekkk 149
+l al+++ens++ a+p+g+q+ +g+k+i++ q +++ q++d+a++ +re+e + ++ + +a e++k
Rsa1.0_03981.1_g00004.1 82 ALSALQYRENSMStttpavsnmaAACPPGCQMPRGVKHIHHPQIHHQqqhhmLQVSDHAYDeTREME---PHDVSPPPGTALESAK 164
***********999******99999***************988755556667888899998666666...55566699******** PP
GAGA_bind 150 kkkrqrakkpkekkakkkkkksekskkkvkkesader........................skaekksidl.vlngvslDestlPv 210
+k+++r k+pk+++++ ++k+++k+ +kvkke++de sk+++ks+++ +ln+v +De+t+P+
Rsa1.0_03981.1_g00004.1 165 PKRGKRVKDPKATTKTTANKRGPKNPRKVKKENEDELtkimfvktsldygeeetsklvltgSKSDWKSQEMvGLNQVVYDETTMPP 250
********************************9884469********************************88************* PP
GAGA_bind 211 PvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtn 295
PvCsCtG lrqCYkWGnGGWqS+CCtttiS+yPLP+ +++r+aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn
Rsa1.0_03981.1_g00004.1 251 PVCSCTGDLRQCYKWGNGGWQSSCCTTTISMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTN 336
******************************************************************88****************** PP
GAGA_bind 296 kfvtir 301
+++ti+
Rsa1.0_03981.1_g00004.1 337 RYITIK 342
*****8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MDDGGHRDNG RHKAPQGQWM MQHQPSMKQV MSIIAERDAA IQERNLAISE RKSAVAERDM 60
AFLQRDTAIA ERNNAIMERD SALSALQYRE NSMSTTTPAV SNMAAACPPG CQMPRGVKHI 120
HHPQIHHQQQ HHMLQVSDHA YDETREMEPH DVSPPPGTAL ESAKPKRGKR VKDPKATTKT 180
TANKRGPKNP RKVKKENEDE LTKIMFVKTS LDYGEEETSK LVLTGSKSDW KSQEMVGLNQ 240
VVYDETTMPP PVCSCTGDLR QCYKWGNGGW QSSCCTTTIS MYPLPALPNK RHARVGGRKM 300
SGSAFNKLLS RLAAEGHHDL SNPVDLKDHW AKHGTNRYIT IK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EF529514 | 0.0 | EF529514.1 Brassica rapa subsp. pekinensis GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
