PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04034.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 217aa    MW: 24632.2 Da    PI: 8.466
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04034.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.41.6e-2252100149
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                              k i+++ +rqvtfskRr+g++KKA ELSvLC+a++ +i fs  +++y +
  Rsa1.0_04034.1_g00004.1  52 KEIKEENRRQVTFSKRRTGLFKKAAELSVLCGAQIGIITFSRCDRVYSF 100
                              6799******************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-2644103IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.17544104IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-2345120IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-204666IPR002100Transcription factor, MADS-box
PfamPF003191.8E-2254100IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-206681IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-2081102IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MENGEATPTP CLLSTGQQKP MPTIPNVARK QRKEKKVQNP KTTKGRQRIE IKEIKEENRR  60
QVTFSKRRTG LFKKAAELSV LCGAQIGIIT FSRCDRVYSF GNVGTLIEKY LRKSPVTLRS  120
KFSDDVATGG GEEDGCMWWE RAVESVPEEE MEEYVKGLSG LRENLWTRIC ELGGDPTVQM  180
NAQAFPDLMA PVDWKMIDEN LTIRNDQDQA GKWIYGL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04034.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469618.11e-160PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A078IML81e-112A0A078IML8_BRANA; BnaC06g24370D protein
TrEMBLA0A0D3CX451e-112A0A0D3CX45_BRAOL; Uncharacterized protein
TrEMBLA0A3N6QC051e-112A0A3N6QC05_BRACR; Uncharacterized protein
TrEMBLA0A3P6FXM61e-112A0A3P6FXM6_BRAOL; Uncharacterized protein
STRINGBo6g091550.11e-112(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.14e-60M-type_MADS family protein