PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04055.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 250aa    MW: 29084.4 Da    PI: 5.9772
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04055.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.33.8e-14135194463
                              XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                               k+ +r+++NRe+A+rsR RK+  i +L + v +L+ eN++Lk++l+  + + +++++++
  Rsa1.0_04055.1_g00003.1 135 EKKRKRMESNRESAKRSRMRKQSHINNLSNQVNQLDMENRELKNRLQLFTYQLQRVTTDN 194
                              6999*******************************************9998888877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.2E-13126190No hitNo description
SMARTSM003382.3E-16132196IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.427134197IPR004827Basic-leucine zipper domain
PfamPF001706.9E-12135186IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.25E-11136189No hitNo description
CDDcd147021.00E-17137182No hitNo description
PROSITE patternPS000360139154IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MLSTVPAFSM SEPGLVNQFS GFQTGFTPWE WDSSDLFSVN QLSLEPAIPS PCYGESDSGL  60
IKINSYFGDI KTGSDEKHTG FNKIEPGFDE VHSSHGVPDE PDSDDPKQWT AIANSDSGEQ  120
NHNRTKLIQP EMTEEKKRKR MESNRESAKR SRMRKQSHIN NLSNQVNQLD MENRELKNRL  180
QLFTYQLQRV TTDNIQLVAE QDILRLRLSE MRRFQMIRQL QQQQQWELNN RRMIMTEQNP  240
SSITDHMIYK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153KRSRMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04055.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480866.10.0PREDICTED: LOW QUALITY PROTEIN: basic leucine zipper 34
TrEMBLA0A3N6RPC91e-163A0A3N6RPC9_BRACR; Uncharacterized protein
STRINGBo7g118720.11e-158(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37730.11e-108basic leucine-zipper 7