PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04126.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 241aa    MW: 26003.6 Da    PI: 7.8408
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04126.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-0597119123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC+ CgksF++   L  H  +H
  Rsa1.0_04126.1_g00002.1  97 FKCTVCGKSFTSYQALGGHKTSH 119
                              89**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.42E-996119No hitNo description
PROSITE profilePS5015711.07497124IPR007087Zinc finger, C2H2
PfamPF139121.5E-1397121IPR007087Zinc finger, C2H2
SMARTSM003550.004997119IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-497119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SuperFamilySSF576672.42E-9158185No hitNo description
PROSITE profilePS501578.933163185IPR007087Zinc finger, C2H2
PfamPF139128.5E-12163187IPR007087Zinc finger, C2H2
SMARTSM003550.48163185IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MALETLNSPS SATATARPLL RYREEMEPDH LEQWAKRKRT KRQRLDQNHH SQDQEPTPSE  60
EEYLALCLLM LARGTAVQPP LTPPPPPRRP SSDHRDFKCT VCGKSFTSYQ ALGGHKTSHR  120
KPPANNVDVP SSQEPSNNNG HSNVVFSGNG TASNGVSQSG KIHTCSICFK SFPSGQALGG  180
HKRCHYDGGN NGNGNGCSSN SVGVIGGSDV SDVDDERSSE RSAIRGFDLN LPADQVSVVI  240
S
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04126.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488722.11e-180PREDICTED: zinc finger protein AZF1
SwissprotQ9SSW11e-103AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A078FAA31e-135A0A078FAA3_BRANA; BnaA06g25060D protein
TrEMBLA0A3P5YJ621e-135A0A3P5YJ62_BRACM; Uncharacterized protein
STRINGBo3g096410.11e-132(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.12e-94zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]