PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04136.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 220aa    MW: 25795.9 Da    PI: 6.3737
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04136.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.2e-1962115457
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                              ++++++eq++ Le  F  ++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Rsa1.0_04136.1_g00001.1  62 KRKLSDEQVRMLEMSFGVEHKLESERKNRLASELGLDPRQVAVWFQNRRARWKN 115
                              45899***********************************************95 PP
2HD-ZIP_I/II120.68.3e-3961151292
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              +kr+ls+eqv++LE+sF  e+kLe+erK++la+eLgl+prqvavWFqnrRAR+k+k+lE +y++Lk+++++ + +++rL++ev +L
  Rsa1.0_04136.1_g00001.1  61 RKRKLSDEQVRMLEMSFGVEHKLESERKNRLASELGLDPRQVAVWFQNRRARWKNKRLEDEYTKLKNEHENAVVQKCRLDSEVLHL 146
                              8************************************************************************************* PP

              HD-ZIP_I/II  88 reelk 92 
                              +e+l 
  Rsa1.0_04136.1_g00001.1 147 KEQLY 151
                              **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.68256116IPR001356Homeobox domain
SuperFamilySSF466894.06E-1859123IPR009057Homeodomain-like
SMARTSM003891.9E-1859120IPR001356Homeobox domain
CDDcd000869.50E-1661117No hitNo description
PfamPF000461.1E-1662115IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-1967115IPR009057Homeodomain-like
PRINTSPR000311.5E-58796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000311.5E-596112IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MNNQHVNDHN LLLISQMYPN VYASLVPQQV DSKPVRPRRR RRSKNVEMAE EAGDGSNGWF  60
RKRKLSDEQV RMLEMSFGVE HKLESERKNR LASELGLDPR QVAVWFQNRR ARWKNKRLED  120
EYTKLKNEHE NAVVQKCRLD SEVLHLKEQL YDAEREIQRL AQRVEGAASN SPISSFISVE  180
ANQATPFFGD YQIGDDCDGY ENLFYSPEYI DGLEWMSQLM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04136.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437401.11e-164PREDICTED: homeobox-leucine zipper protein ATHB-21-like isoform X2
SwissprotQ9ZU701e-121ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A3P6B3541e-136A0A3P6B354_BRACM; Uncharacterized protein
STRINGBra028099.1-P1e-127(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.11e-120homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]