PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04200.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 137aa    MW: 16197.6 Da    PI: 10.8085
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04200.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind46.78.8e-151298297
                             HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH.HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind  2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk.yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87
                             F + lyei++d++ + +isws ++++sfvv+d eef k++Lpk ++  +nf+ Fv  L    F+++ +            eF h++F 
  Rsa1.0_04200.1_g00003.1 12 FFTDLYEIVNDHSSDAIISWSnNSNSSFVVWDVEEFCKRILPKsVWFGRNFSEFVSELRYHRFQRIGR-----------FEFGHENFA 88
                             999******************666799**************87578899**********999998865...........579999999 PP

                             XXXXXXXXXX CS
             HSF_DNA-bind 88 kgkkelleki 97
                             +g+  ll+++
  Rsa1.0_04200.1_g00003.1 89 RGRPWLLKRM 98
                             9998888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.4E-19796IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-168101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.61E-20998IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-161298IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MVHRIATGSN SFFTDLYEIV NDHSSDAIIS WSNNSNSSFV VWDVEEFCKR ILPKSVWFGR  60
NFSEFVSELR YHRFQRIGRF EFGHENFARG RPWLLKRMVP SKTLDDEFRA KLKAKRDKAK  120
AKKARAKVVR LLENLQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117123KAKAKKA
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04200.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479723.13e-97PREDICTED: heat stress transcription factor A-4a-like
TrEMBLM4ENH13e-53M4ENH1_BRARP; Uncharacterized protein
STRINGBra030341.1-P5e-54(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.14e-16Winged helix-turn-helix transcription repressor DNA-binding