PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_04207.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GRAS

Protein Properties

Length: 114aa MW: 12657.4 Da PI: 6.9293

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_04207.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	24.4	3.3e-08	27	82	189	250
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250 ++++++++p Ea++V+++ hrl+d ++s + ++++++ +P +v+v+eqe+++++ Rsa1.0_04207.1_g00001.1 27 TDPSRFETRPSEAVVVHWMQ--HRLYDVTGSYLD----AVEIIRRWKPSLVTVMEQELSCDD 82 578999***********9..99999999....9****************98854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.2E-5	27	82	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MITRRFRSLL IPPLRASSHV GVIGNVTDPS RFETRPSEAV VVHWMQHRLY DVTGSYLDAV 60 EIIRRWKPSL VTVMEQELSC DDDGGGCCGV VRRAWSGFQN HGDDDGGGGM VLKT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_04207.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140132.1	1e-29	PREDICTED: scarecrow-like protein 23
Swissprot	Q9FHZ1	3e-25	SCL23_ARATH; Scarecrow-like protein 23
TrEMBL	A0A397ZNW7	2e-28	A0A397ZNW7_BRACM; Uncharacterized protein
TrEMBL	M4E9K0	2e-29	M4E9K0_BRARP; Uncharacterized protein
STRING	Bra025456.1-P	3e-30	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25207	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41920.1	6e-25	GRAS family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yoon EK, et al. Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots. Mol Plant, 2016. 9(8): p. 1197-1209 [PMID:27353361]