PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04220.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 574aa    MW: 63642.3 Da    PI: 6.5149
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04220.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.46.6e-28200253155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              k r++W+ eLH++Fv av++L G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  Rsa1.0_04220.1_g00001.1 200 KRRVVWSVELHQQFVAAVNHL-GVDKAVPKKILEIMNVPGLTRENVASHLQKYRI 253
                              689******************.********************************7 PP
2Response_reg761.4e-25221301109
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl+vdD+p+ +++l+++l+   y +v+ +  +e al ll++++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a ++++
  Rsa1.0_04220.1_g00001.1  22 VLVVDDDPTCLMILERMLRTCLY-RVTKCNRAEIALSLLRKNNngFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADESKS 105
                              89*********************.***************999999**********************6644.8************* PP

                              HHHHHHHTTESEEEESS--HHHHHH CS
             Response_reg  85 dalealkaGakdflsKpfdpeelvk 109
                               +l+ +  Ga d+l Kp+ +e+l +
  Rsa1.0_04220.1_g00001.1 106 VVLKGVTHGAVDYLIKPVRMEALKN 130
                              ********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.0E-1674566IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23004.2E-4119165No hitNo description
SuperFamilySSF521728.97E-3519146IPR011006CheY-like superfamily
SMARTSM004482.1E-2920132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.26421136IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.2E-2322130IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.35E-2723135No hitNo description
PROSITE profilePS5129412.601197256IPR017930Myb domain
SuperFamilySSF466891.97E-19198257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-29199258IPR009057Homeodomain-like
TIGRFAMsTIGR015579.3E-25200253IPR006447Myb domain, plants
PfamPF002491.4E-7202252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MLNPGAVGGS SNSDPFPAGL RVLVVDDDPT CLMILERMLR TCLYRVTKCN RAEIALSLLR  60
KNNNGFDIVI SDVHMPDMDG FKLLEHVGLE MDLPVIMMSA DESKSVVLKG VTHGAVDYLI  120
KPVRMEALKN IWQHVVRKKR NVSEHSGSVE ETGGDRQQQQ RDDGDAGENN SSSGNNEGRR  180
KRKEEEQGDD DKEDSSSLKK RRVVWSVELH QQFVAAVNHL GVDKAVPKKI LEIMNVPGLT  240
RENVASHLQK YRIYLRRIGG VTQQQGSMNH SFMSSQEPSY GPSNGFDLQA LAVAGQLPAQ  300
SLGRPSSLIK QGIMSADQRS TFTFENSLKS RFGAGHGQMM MNSGNNQMSL LHGVPTGHMR  360
LQQQQQQMAS MHVADQLGPS MQQQQQSMLS RRSLLTDALV VRNSSRVLPA ATQSVFNNSF  420
PGMSVSDTKG GSSAAAGFGN PSYDNIFNDF PQQQQHNRVN EWDGMVFNSH QDNTASAPFS  480
TSEAYSSFST HKRKREAELV VDHGQKNQVY VTDGGSVRVK TETVTCPPPQ ETTMMFHEEY  540
NQEDLMSALL KQEGLPSIDN EFDFEGYSFD NILV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-21196258163ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183RRKRKE
2180201KRKEEEQGDDDKEDSSSLKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04220.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478855.10.0PREDICTED: two-component response regulator ARR2-like isoform X1
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A0D3DEC10.0A0A0D3DEC1_BRAOL; Two-component response regulator
TrEMBLA0A3P6EJ190.0A0A3P6EJ19_BRAOL; Two-component response regulator
STRINGBo7g104190.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24032773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.10.0response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]