PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04298.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 605aa    MW: 68761.5 Da    PI: 6.1412
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04298.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like65.97.2e-21241298155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                              k+r++Wt +L e+F +a++ LGG++kA Pk++l+    m+vkgLt+  v SHLQkYRl
  Rsa1.0_04298.1_g00005.1 241 KKRMEWTRDLEEKFHKAIDDLGGAKKANPKRLLKRleeMNVKGLTRRIVCSHLQKYRL 298
                              78*****************************97643339******************8 PP
2Response_reg58.24.7e-20361431108
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl+v+ + + +  ++++++k gy +v+  +d+e+al+ l++++  ++l++ D  mpg +G+++lk i +e  +lp++++++ +  +
  Rsa1.0_04298.1_g00005.1  36 VLVVEPNFVTLLKMKKLMSKYGY-QVTIYADAESALAFLRNREheINLVIWDFHMPGTNGIQALKIICTEM-DLPVLIMSDDDRTT 119
                              799999999999***********.***************666556**********************8866.9************* PP

                              HHHHHHHTTESEEEESS--HHHHH CS
             Response_reg  85 dalealkaGakdflsKpfdpeelv 108
                               + ea+  Ga  +++Kp+ +e l 
  Rsa1.0_04298.1_g00005.1 120 SVMEAMVHGACYYVTKPVRKEVLA 143
                              *****************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.3E-2934157No hitNo description
SMARTSM004482.7E-1834146IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521728.54E-2834157IPR011006CheY-like superfamily
PROSITE profilePS5011035.99935150IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-1636144IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.01E-1837149No hitNo description
Gene3DG3DSA:1.10.10.602.3E-19239301IPR009057Homeodomain-like
SuperFamilySSF466896.27E-9240301IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-16241298IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MSEGNRTDDG DRTLFKQQET SQISSFLNEF PASTNVLVVE PNFVTLLKMK KLMSKYGYQV  60
TIYADAESAL AFLRNREHEI NLVIWDFHMP GTNGIQALKI ICTEMDLPVL IMSDDDRTTS  120
VMEAMVHGAC YYVTKPVRKE VLANIWQHIV RKRMMPKLSV IPPVQLDGVH NQDSFKQDKD  180
DPMPVDQGNS EQNINMIGEN LPIQSDSVQS DGLDQDNNDS RTTSPYNGGQ NIDGEERRQL  240
KKRMEWTRDL EEKFHKAIDD LGGAKKANPK RLLKRLEEMN VKGLTRRIVC SHLQKYRLSL  300
QGKQTTQPMQ EFRWSRACTN SPLLDWNNVH SATSSLINGG ASYPPARKQY QNGYMAVNNN  360
NTASSSLMTG RATYPVQDNQ YQNGYMEVNN NNTALLSLMS GRATYPVQDN QYQNGYMEVN  420
NNHAASPSLM NGRATYPVHE NQYQNGYMEV NNNLAASSSN GRATYPVQDN QYQNGYLGVN  480
NNQVMTNTMP RLPYDLDHDH HLQKQKLEQQ HMLSNQLKPE NASSSDIEED RGLTYTVPRL  540
PYDLSHGNHL QQQQEHQLPH RWNNVMSNNE PELASGNGVT GPEGVDPSLP YDPNELFING  600
YNYNQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04298.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488100.10.0PREDICTED: putative two-component response regulator ARR19
TrEMBLA0A3P6EJJ40.0A0A3P6EJJ4_BRAOL; Uncharacterized protein
STRINGBo00904s040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.13e-67response regulator 19